Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0472 ATGAAGAATCAGAATATGGTGGATCCAGTTGCGAAATCACGTGTTAACACACTTGTGGCGTTTGCAAACTCAACTAATTTACTCAAATCATCTGTAACAGCTACTTCCCTTGGTGGGTTTTGGGGTCTTTACCCCAAAAAGCTTATGAAAACGTTGAAGAATAGTAAAGGAGATGCTAAAGTAAACACCTTCATTGATTCCATGAGAGCATCTTCTCCTACTAGAACCAAATCAGAAGAAAACCAAGACAAAACTCCTACTTGGATTCTTTATCATCCTTCAGCGCTGAACATGTTTGATGAAATAGTATATAACTCGAGAGGGAAGCAGATTGTAACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATTCATGACTGAAAAGATGAGAGCAACCCTCAAGGATATAGCAATGCATTTTCCCACCGCCATAGTGAGTGGAAGGTCCCTTGACAAGGTATATAACTTTGTGCAATTGACAGAATTGTACTATGCAGGAAGCCATGGCATGGACATAAAGGGACCAACAAAATCCCAAAGTCATAAGAAAAACAATGAAGCAGTACTATTCCAAGCTGCTAGTCAATTCCTACCCATGATCAATGAGGTTTACAAGATCTTGGTAGAAAAAACAAAATGTGTTCCGGGGGCTACGGTAGAAAGTAACAAGTATTGTTTGTCTGTGCATTTTCGCTGTGTTGACGAAAAGAATTGGGCATCATTGGCGCAGAAAGTTAGATCAGTGTTAAAAGAATACCCAAAACTTAGGCTTAGCCAAGGGAGAAAAGTGCTAGAGATTCGACCATCCATAGAATGGGACAAGGGCAAAGCTCTTGAGTTTTTATTAGAATCATTAGGATATGATAATTCTAATAATGTATTTCCAATCTACATTGGTGATGATCGAACTGACGAAGACGCTTTTAAGGTTTTACGCAGTAGGGGTCAAGGGATTGGGATTCTTGTATCTCAAATTCCAAAAGAAACAAATGCTTCATACACTTTGCAGGATCCATCTGAGGTTTGCCAATTTTTGCAGCGTTTGGTGGAGTGGAAAATAAAGAGTTCTCACTGCTACAAGTTGTAG 1110 0.3937 MKNQNMVDPVAKSRVNTLVAFANSTNLLKSSVTATSLGGFWGLYPKKLMKTLKNSKGDAKVNTFIDSMRASSPTRTKSEENQDKTPTWILYHPSALNMFDEIVYNSRGKQIVTFLDYDGTLSPIVADPDKAFMTEKMRATLKDIAMHFPTAIVSGRSLDKVYNFVQLTELYYAGSHGMDIKGPTKSQSHKKNNEAVLFQAASQFLPMINEVYKILVEKTKCVPGATVESNKYCLSVHFRCVDEKNWASLAQKVRSVLKEYPKLRLSQGRKVLEIRPSIEWDKGKALEFLLESLGYDNSNNVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSQIPKETNASYTLQDPSEVCQFLQRLVEWKIKSSHCYKL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0472 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 369 IPR044651 GO:0004805|GO:0005992
Lan11g0472 369 Gene3D - 227 368 IPR023214 -
Lan11g0472 369 Gene3D - 111 219 IPR023214 -
Lan11g0472 369 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 114 321 IPR006379 -
Lan11g0472 369 CDD HAD_TPP 114 349 - -
Lan11g0472 369 Pfam Trehalose-phosphatase 114 347 IPR003337 GO:0003824|GO:0005992
Lan11g0472 369 TIGRFAM T6PP: trehalose-phosphatase 109 357 IPR003337 GO:0003824|GO:0005992
Lan11g0472 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 369 - -
Lan11g0472 369 SUPERFAMILY HAD-like 114 359 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0472 Lan-Chr11 3585278 3587904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0472 100 353 Trehalose Biosynthesis Gene Families AT1G23870 27.547 3.72e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0472 K01087 - gmx:100792915 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0472 11 3585278 3587904 Lan9g1114 9 18500014 18503282 LSH
Lan11g0472 11 3585278 3587904 Lan15g0846 15 17663489 17666130 PCT
Lan11g0472 11 3585278 3587904 Lan14g0647 14 13412721 13415199 PCT
Lan15g0846 15 17663489 17666130 Lan11g0472 11 3585278 3587904 PCT
Lan14g0647 14 13412721 13415199 Lan11g0472 11 3585278 3587904 PCT