Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0459 ATGGCTTACCAACATTATCGATCACAGTTTGGAGACACAACATTCACCAAAGTCTTTGTTGGAGGACTAGCTTGGGAGACTCCAACTGAAGAAATGCGCAAATATTTTGAGCAGTTTGGAGACATTCTTGAAGCTGTCATTATCACCGATAAGAACACTGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCATGAATCAGCTAGAAGGGCTTGTGCAGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGTACATTTCAAGGTGGAGGGACCGGGACAGTACAGGGTGCAGGAACATACAGTGGTGTTCCGGCAGCAGGACCACCGGCACTGTCACCACCACTATTGTACCCACAACCATATGGCTACCCTACCTACACTCCTGATTATGGTTACCACCAAGCCACAATGTACAACCCACAGATTCAACAAGCACAATACTATCAACAACTTTATGGACCATCAACATCCACCATAGGCTCTCCATATTACTATGGATATTCAGTACAAGCACCTAGGGGTACATTTTCTACACCCCAACCACATCGTTTGCCAGCTGGACCATCTTATATATACTATCCTACTTCACCTATGGAAGGCTCTTCTGCATTTCGTCCACCTTATCACCCACCAACAAGACAAATCCCTCTGTCCCCTGGTGATTCACAGAGTCAGCAACAACGTACCTCCTCAGAGACAGCCTCTGGAGTAGTTGTAACTTCAGAAAGTTCAAATATTCAAGGGAAGAGCTAA 816 0.4498 MAYQHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDHESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGGTGTVQGAGTYSGVPAAGPPALSPPLLYPQPYGYPTYTPDYGYHQATMYNPQIQQAQYYQQLYGPSTSTIGSPYYYGYSVQAPRGTFSTPQPHRLPAGPSYIYYPTSPMEGSSAFRPPYHPPTRQIPLSPGDSQSQQQRTSSETASGVVVTSESSNIQGKS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0459 271 MobiDBLite consensus disorder prediction 91 126 - -
Lan11g0459 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lan11g0459 271 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lan11g0459 271 PANTHER - 1 261 - -
Lan11g0459 271 PANTHER GEO13361P1-RELATED 1 261 - -
Lan11g0459 271 SUPERFAMILY RNA-binding domain, RBD 12 114 IPR035979 GO:0003676
Lan11g0459 271 MobiDBLite consensus disorder prediction 237 271 - -
Lan11g0459 271 Gene3D - 3 113 IPR012677 -
Lan11g0459 271 CDD RRM_RBM24_RBM38_like 16 91 - -
Lan11g0459 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Lan11g0459 271 MobiDBLite consensus disorder prediction 222 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0459 Lan-Chr11 3443116 3448311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0459 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 5.71e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0459 K25006 - gmx:100787086 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0926 2 20027543 20035243 Lan11g0459 11 3443116 3448311 LSH
Lan11g0459 11 3443116 3448311 Lan9g1119 9 18570929 18576361 LSH