Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0455 ATGGTGTGGACACATAGAAAGCTCTTTCCTTCAGAAACTAGTGCAAACCAAACCCAAAATTGTTATGGAGTTTGTGACCCAGCATGCCCTTACAATTGTGACTCTTACCCAGGATACTACTTCCCTCCACCACCATCACCACTATATATTGATCACTCAAACCAAGTTAACCATGTCCCCTCTTACATGATCATCCTTGTTTCTTTATTCACAGTCATTTTCGCTGTTTCTGCTTTCTATGTGATCAAATTGAAGTGTTATAATGACTTGTGTGGCAGAAGAGTCAATAGATCAATTCCTCCTCAATCAAACAACAATGAACAGTTTGTAAATGAGAACCAAGTTGATCATCCTGTGTGGTTCATCACCACAGTTGGTTTACAGCAGTCAATCATAAATTCCATCGAAGTTTTCAAGTACAAAAAAGATGAAGGATTGATCGAAGGAACCGAGTGTTCTGTCTGTTTGAATGAGTTCAGGGAAGGTGATACCTTAAGACTATTGCCAAAGTGCAATCATGCTTTTCATATTCCTTGCATTGACACTTGGTTAAGGTCTCATACCAATTGTCCTCTTTGCCGAGCCAGTATTGTGTCTAGTAACAATGTTAGTGTTACAACTGAAGAAGCAATGTCAAATTTGGCTTCAATAGAGCAAGAAAGTGTTAACTTGGGAAGAGATCAAGATACCCAGATGGAGAATTCACACAATGATAGAGTTGGTGGATCAGAAGAAGCAAGTGAGGTAATGGAATTAAATGATGAATCTTATTCTAAGCATCACGCTTCTCGAGTACTAAATGATCCAAATGGGAACCATGATGTTGTTCTATATGGAAAATCTTGTTCAGAAAATCCTGAAAGTTGTCCTGTTGATCAAATACAAGATAAGAAAGAGTTGCAAGTGGATAATGTTTTGAAGCAAGAAAGTGATTACTCAAAAACGTGCAAGACAATGCGTCGTTCCTCAATTGAAGGGTGTCTGCATATAAGCCCGGTTTCTATGAAAAGATCGTTCTCCTATAGTGGAAGGATTCTATGTACCAGAAGTTATATGAGTCTAAAGAATACTCTTCTATCTATGAAATATTTACATAGCATACCATTAGATGCTAGTATTTTGGGGCATTCTTATTGA 1137 0.3773 MVWTHRKLFPSETSANQTQNCYGVCDPACPYNCDSYPGYYFPPPPSPLYIDHSNQVNHVPSYMIILVSLFTVIFAVSAFYVIKLKCYNDLCGRRVNRSIPPQSNNNEQFVNENQVDHPVWFITTVGLQQSIINSIEVFKYKKDEGLIEGTECSVCLNEFREGDTLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRASIVSSNNVSVTTEEAMSNLASIEQESVNLGRDQDTQMENSHNDRVGGSEEASEVMELNDESYSKHHASRVLNDPNGNHDVVLYGKSCSENPESCPVDQIQDKKELQVDNVLKQESDYSKTCKTMRRSSIEGCLHISPVSMKRSFSYSGRILCTRSYMSLKNTLLSMKYLHSIPLDASILGHSY* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0455 378 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Lan11g0455 378 Pfam Ring finger domain 151 194 IPR001841 -
Lan11g0455 378 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 352 IPR044675 -
Lan11g0455 378 SMART FANCL_C_2 148 201 - -
Lan11g0455 378 MobiDBLite consensus disorder prediction 226 246 - -
Lan11g0455 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
Lan11g0455 378 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 352 - -
Lan11g0455 378 SUPERFAMILY RING/U-box 138 200 - -
Lan11g0455 378 SMART ring_2 152 193 IPR001841 -
Lan11g0455 378 CDD RING-H2_PA-TM-RING 151 194 - -
Lan11g0455 378 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0455 Lan-Chr11 3368597 3370392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0455 5 207 C3H Transcription Factor Family AT1G72220 45.415 2.04e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0455 - - aprc:113847030 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0455 11 3368597 3370392 Lan9g1123 9 18612265 18613813 LSH