Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0454 ATGGCCCTAGAAGCTGTGGTTTTCCCACAAGATTCATTTAATTATGGTTGCAACAAGGACTATTTGTACTCCTTAATAGGAGAAGCAAGTGGTGGATCCTACGGTTTCCAAAGAGCAGAAGAAGAGAGAGCCCTTCTTGGAATCATCAACAATAACATAGAGCAAGGTCTGCATGCAAATTGGGATTCTTCTCCTACAGTGTTGCAAAGTAACAAGGAGAAATGGGATTCATACTCTTCCCCTGAGACTGCCACTGCAGATCAATATTTGTTAGGAATTCTGCCTCCTCCTCCCTCCGTGGAAGCCAGTGTTACTACTACCACCACCACTACTCGTCGCAAACGACGACGCACGAAGAGTGCCAAGAACAAAGAGGAAATCGAGAACCAGAGGATGACTCACATTGCAGTTGAGCGCAATAGAAGGAAACAAATGAATGAGTACTTGGCTGTACTTAGATCTTTGATGCCTGCTTCTTATGTACAAAGGAGTGATCAAGCTTCTATTATAGGAGGTGCCATTAACTTTGTGAAGGAGCTAGAGCAGACTTTACAGTGCATGAAAGGCCAAAGCCAAAAGAAAACAAAGCAACAACCTCTTCCTGAGAATGGCTTCCCTTGTTCATCTCCCTTTGCTGAGTTCTTCATATTCCCTCAGTACTCAACGCGTGCAACTCAAGGCATGAACCAACCCACAAGCGATGTTATGATGACACAAAACCAGAATCAGAACCAGAACCAATCTTGTGCCATGGCAGACATAGAAGTAACCTTGGTGGACAGCCATGCAAACATAAAGATACTATCAAAGAAACAACCTAGACAGCTTATGAAGATTGTTGTTGGGATACAAAGTCTTAACCTCAACATTCTCCACCTTAATCTTACCACTGTGGATGACATGATCCTTACCTCTGTTAGTGTAAAGGTTGAGGAAAGATGTCAGATGAATTCAGTGGATGAAATTGCATCTGCTGTGAATCAACTATTACACACAGTGCAGGAGGAAACTGCTTTCAGCTGA 1023 0.4311 MALEAVVFPQDSFNYGCNKDYLYSLIGEASGGSYGFQRAEEERALLGIINNNIEQGLHANWDSSPTVLQSNKEKWDSYSSPETATADQYLLGILPPPPSVEASVTTTTTTTRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPASYVQRSDQASIIGGAINFVKELEQTLQCMKGQSQKKTKQQPLPENGFPCSSPFAEFFIFPQYSTRATQGMNQPTSDVMMTQNQNQNQNQSCAMADIEVTLVDSHANIKILSKKQPRQLMKIVVGIQSLNLNILHLNLTTVDDMILTSVSVKVEERCQMNSVDEIASAVNQLLHTVQEETAFS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0454 340 MobiDBLite consensus disorder prediction 98 125 - -
Lan11g0454 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 200 IPR036638 GO:0046983
Lan11g0454 340 CDD bHLH_AtFAMA_like 132 207 - -
Lan11g0454 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 180 IPR011598 GO:0046983
Lan11g0454 340 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 338 - -
Lan11g0454 340 Pfam Helix-loop-helix DNA-binding domain 130 181 IPR011598 GO:0046983
Lan11g0454 340 Gene3D - 119 198 IPR036638 GO:0046983
Lan11g0454 340 PANTHER MAX DIMERIZATION, MAD 1 338 - -
Lan11g0454 340 Coils Coil 177 197 - -
Lan11g0454 340 SMART finulus 135 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0454 Lan-Chr11 3364515 3366429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0454 1 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.311 2.28e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g0454 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0454 - - gmx:100803240 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0454 11 3364515 3366429 Lan15g0868 15 17930536 17933325 PCT
Lan15g0868 15 17930536 17933325 Lan11g0454 11 3364515 3366429 PCT