Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0453 ATGGGTGACTTGCATGCAAATATATGGTCCAAGAATAACAAAATTTTGCACTTGAGCCTCCAAAAGCAAAGTCACGTTATCAGTATCTATAGTTTCATTCACACCCATTCATTCCTTGCTTTGTTCCTTCTTCTTGTTTTCGTACAAACCTCATCACCAGCAACTGCTCAATTCGTAGTAGGAACAGAAGTGGACCCTAACACAAATAATAAATCATCTGTTTTCGCTGTCTTAGCAATAGTGGTCATTTTGTTCTTCATCTCAGCCTTTCTTTCACTCTTCTCTCGTCAATGTGCTGGTGGCCGAACAAGAACCTTAAGCAGGATCAACCTCGCGTTGCACACCGGAAACAACGGTACACGGTCACGCAGCGAGTCACGTGGTCTCAAACAAGAGATCATTGACACGTTCCCCACTTTCCTCTACTCCAATGTGAAGAGCCTCAAGATTGGTAAAGAAAATTTAGCATGTGCTGTGTGCTTGAATGAGTTCCAAGACGATGAAACTCTGCGTTTGATACCTAATTGCAACCATGTTTTCCACCCAAGTTGCATCGATGTTTGGTTATCCTCTCACTCTACCTGCCCAGTTTGTCGTGCGAATTTAGTTCCAAGATCAGAAGCCACTCCCCCAACGGTGTCCGTTCAGATACCAAACGAGGAAGGAGAAACCATTACGAACGAAGAAAACAACGACGTTGAATCACCAAAGGTGAATTTGCTTCATAGGAGTCAAACAATGAATCAAAGCCGTCCAACACGATCTAGGTCAACGAGGTTCTTATTTAATGTATTGTTTCCACGGTCATATTCAACAGATCGTGACTTTGGGGAGAGATTCGAAAGGTACACTCTCAGGTTACCAGATGAGGTTTTGAACTCGACACTGAAGCGTACTAATAGTTGTGTGAATTTTCGGAGAATGGGTAGTGGGAGGAAGGGTTTTAGAACAAGAAGCTTGGGTAGTGGAAGTGGGAGGAGCTACTTGAGGAGTGAAGAGCAATCGCGGTTCTCAACTACGATGCCGTTTTTCACTAGGAACCATTGGAATAGATTGTCAAAAAAATCATCTGAACGTTCTTCAGTGGTGATGTTGGACGATCATGTTGGGGAAAGATCCTCTGATCTTATGTGTCCCAAGTAG 1143 0.4339 MGDLHANIWSKNNKILHLSLQKQSHVISIYSFIHTHSFLALFLLLVFVQTSSPATAQFVVGTEVDPNTNNKSSVFAVLAIVVILFFISAFLSLFSRQCAGGRTRTLSRINLALHTGNNGTRSRSESRGLKQEIIDTFPTFLYSNVKSLKIGKENLACAVCLNEFQDDETLRLIPNCNHVFHPSCIDVWLSSHSTCPVCRANLVPRSEATPPTVSVQIPNEEGETITNEENNDVESPKVNLLHRSQTMNQSRPTRSRSTRFLFNVLFPRSYSTDRDFGERFERYTLRLPDEVLNSTLKRTNSCVNFRRMGSGRKGFRTRSLGSGSGRSYLRSEEQSRFSTTMPFFTRNHWNRLSKKSSERSSVVMLDDHVGERSSDLMCPK* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0453 380 CDD RING-H2_EL5_like 157 199 - -
Lan11g0453 380 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Lan11g0453 380 MobiDBLite consensus disorder prediction 313 333 - -
Lan11g0453 380 Pfam Ring finger domain 156 199 IPR001841 -
Lan11g0453 380 PANTHER RING FINGER DOMAIN-CONTAINING 19 321 - -
Lan11g0453 380 SMART ring_2 157 198 IPR001841 -
Lan11g0453 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 204 IPR013083 -
Lan11g0453 380 SUPERFAMILY RING/U-box 151 211 - -
Lan11g0453 380 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0453 Lan-Chr11 3351645 3352787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0453 42 314 Rapid Response to Elicitors AT3G05200 38.488 8.32e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0453 K10664 - gmx:100814384 290.426