Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0440 ATGGCAAAAAAGTTTGAAACACACGACCCCTTCTCGAAGTTTCTTCAACAACAACAATCCCAGTCTCACCCTAACCCTTTCCAACTCTCTAGAGAATGTGAAACCTCCGAAGATGATGACAGTCGCAGCAGCGGTGGCCCCACTCCAGTCACAACCCAAAAGCCCGCCTCCTTCTCTGCTAGCGGAGGAGATACTATTGAAGCCTCGCGTAAGCCCAGAGGCCGCCCACCAGGCTCTAAAAACAAGCCCAAGCCTCCTATCATAATAACTCAAGAGCCCGAGCCCACCATGAGCCCCTATATTTTAGAAGTCCCGGGTGGAAGCGACGTCGTTGAAGCCTTAACCCGATTCACTATTCGAAAGAACACGGGCTTATGCGTTCTTACGGGTAATGGAACCGTTGCTAACGTTACTCTACGTCAACCTTCTTCTGTTGCTCCTGGCACCACCGTTACTTTTCGCGGATGCTTTGATATTCTCTCGTTATCCGCCACCATACTCCCTCACTCTTCGCCGGTGATTCCTAAAGCTTTTTCTATTTCTCTCGCCGGATCTCAGGGCCAAGTCGTCGGTGGATTTGTCGCGGGACGGTTGCTTGCCGCTGGGACGGTGTTCGTGATTGCAACTTCTTTCAACAATCCATCTTATCACAGGCTGCAATCAGAAGAAGATTCGAGAAACCACAACTCGGTTTCTGGTGGCGGTGATGTGCAGTCGCCGCCGTTGTCTAGCGGTGAAGGAGGCAGAGATAGTGGGCATGAGCGGCACGTGGTGGGTGAGTCTATGTACAGCAGTCACTTGCCCTCTGATGTGATTTGGGCTCCAACAGCAAGACCACCACCTCCACCACCTTTCTGA 858 0.5186 MAKKFETHDPFSKFLQQQQSQSHPNPFQLSRECETSEDDDSRSSGGPTPVTTQKPASFSASGGDTIEASRKPRGRPPGSKNKPKPPIIITQEPEPTMSPYILEVPGGSDVVEALTRFTIRKNTGLCVLTGNGTVANVTLRQPSSVAPGTTVTFRGCFDILSLSATILPHSSPVIPKAFSISLAGSQGQVVGGFVAGRLLAAGTVFVIATSFNNPSYHRLQSEEDSRNHNSVSGGGDVQSPPLSSGEGGRDSGHERHVVGESMYSSHLPSDVIWAPTARPPPPPPF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0440 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 14 284 - -
Lan11g0440 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 284 IPR014476 GO:0003680
Lan11g0440 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 213 IPR005175 -
Lan11g0440 285 MobiDBLite consensus disorder prediction 42 64 - -
Lan11g0440 285 MobiDBLite consensus disorder prediction 219 263 - -
Lan11g0440 285 MobiDBLite consensus disorder prediction 11 31 - -
Lan11g0440 285 Gene3D - 98 232 - -
Lan11g0440 285 PIRSF ESCAROLA 5 273 IPR014476 GO:0003680
Lan11g0440 285 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Lan11g0440 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 225 - -
Lan11g0440 285 MobiDBLite consensus disorder prediction 1 92 - -
Lan11g0440 285 CDD DUF296 99 211 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0440 Lan-Chr11 3236695 3237892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0440 65 282 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 60.177 3.89e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0440 - - gmx:100811053 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0950 2 20464768 20465864 Lan11g0440 11 3236695 3237892 LSH
Lan11g0440 11 3236695 3237892 Lan9g1137 9 18739229 18740228 LSH
Lan11g0440 11 3236695 3237892 Lan15g0558 15 12863003 12864962 PCT
Lan11g0440 11 3236695 3237892 Lan3g0758 3 14165037 14167165 PCT