Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0438 ATGCTTCCTTTTGGGAGATTCTATGGGTTGGAGAGCTGGGTAGATATCAATCCAGAACCATCTCGTTCGTTGATGAAGGGAATGGAAATGAACGATAGCAGATCAAAATCAGAGAGGAAATCAATGGAAGCATGCAAGAGTCACAGAGACGCTGAAAGGAGACGCAGACAGCGAATCAATGACCACCTCACTACCTTACGCTCTCTCCTTCCTAACAACACCCTCAAGTCTGATAAGGCGTCGTTACTGGCGGAAGTGGTTCAACACGTGAAGCAGTTGAGGAAACAGGCTGATGACGTGGCGCACGGAGACTCATACTGCAGCGGCAACAGCGAACCCTGTTCGGTTAGTTCTCCGGCGGAGGACGTTGAGCCGTGGCCGTTTCCCGGAGTGTTCGATGAGGCGACGGTGAGCTATTGCGACGGGGAACCAAATCGGATGAAGGTCACGTTGTGCTGTGAAGACCGGCCTGGGCTGAACCAGGATCTGATTCAGGCCATTCGGTCGGTTCGGGCAAAGGCGGTTCATGCGGAGATGACAACGATCGGGGGCAGGACCAAGAATGTTGTGGTGATTCAATGGGATACGAAGGAAGAGGTTGGGGCTTTAGAACGGGCTTTGAAAGCGGTGATAGAGAATCGGGCTTTTATGGACCCTTGGATGGGCCGGGTTGTGGTGGGCCAGAAACGGGCTCGGGATTGTTATGGTTCGTTTGTGGAGGTTGACTGA 729 0.5281 MLPFGRFYGLESWVDINPEPSRSLMKGMEMNDSRSKSERKSMEACKSHRDAERRRRQRINDHLTTLRSLLPNNTLKSDKASLLAEVVQHVKQLRKQADDVAHGDSYCSGNSEPCSVSSPAEDVEPWPFPGVFDEATVSYCDGEPNRMKVTLCCEDRPGLNQDLIQAIRSVRAKAVHAEMTTIGGRTKNVVVIQWDTKEEVGALERALKAVIENRAFMDPWMGRVVVGQKRARDCYGSFVEVD* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0438 242 MobiDBLite consensus disorder prediction 24 55 - -
Lan11g0438 242 Gene3D - 143 217 - -
Lan11g0438 242 SUPERFAMILY ACT-like 145 212 IPR045865 -
Lan11g0438 242 Gene3D - 32 103 IPR036638 GO:0046983
Lan11g0438 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 101 IPR036638 GO:0046983
Lan11g0438 242 PANTHER TRANSCRIPTION FACTOR BHLH30 20 232 IPR045847 GO:0003700|GO:0006355
Lan11g0438 242 MobiDBLite consensus disorder prediction 29 55 - -
Lan11g0438 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Lan11g0438 242 PANTHER OS09G0463900 PROTEIN 20 232 - -
Lan11g0438 242 CDD ACT_UUR-ACR-like 149 211 - -
Lan11g0438 242 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Lan11g0438 242 SMART finulus 49 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0438 Lan-Chr11 3224436 3225672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0438 40 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.323 4.44e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g0438 HLH 6.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0438 - - gmx:100816394 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0953 2 20496868 20498041 Lan11g0438 11 3224436 3225672 LSH