Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0437 ATGGTGAGGCAGAAGATCAAGATAAAGAAAATTGACAACCTAACGGCTAGGCAAGTGACTTTCTCTAAGAGGAGAAGAGGGATCTTCAAGAAAGCTCAAGAACTTTCTGTGTTGTGTGATGCTAAGGTTGGTCTCCTTGTTTTCTCAGCTACTGGGAAACTCTATGAATACGCCAGTTCAAGTATGAAGGACGTACTTACAAGGTATAATCAGCATTTTCATGACATCAACCAAAGGGAAAGACCTCTAGAACTGCAGCTAGAGAATAGCATTAATCACGCTGAGTTGAGTAAGGAAGTGGCAGATAAAACTCAGCTACTAAGGCGAATGAAAGGTGAGGATTTTGAAGGGCTAAACCTAGATGAGTTGCAGCAACTGGAGAAAAGACTTGAAGCAGGACTCAAGCGCGTGATTAAGACAAAGGAAAAGCTGATTACGGATGAGATTGTTGCACTTCAGAAAAGGGGAATGAAGTTAGAAGATGAGAGCAGGCAGTTAAAGCAAAAGATGAGTATGATGTACAAGGGAAAAAGTCCATCAATGGTGGACAAGGATATAGCCATTCAGGAAGCTGTTTCATTAGACTCTATGAATAATGTCTGCAGCTGCAACAGTTGCCCTTCTCTTGATGATGATTCTTCTGACATATCTCTTAAGTTAGGGTTGTCTTTCCCTGATTGA 681 0.4126 MVRQKIKIKKIDNLTARQVTFSKRRRGIFKKAQELSVLCDAKVGLLVFSATGKLYEYASSSMKDVLTRYNQHFHDINQRERPLELQLENSINHAELSKEVADKTQLLRRMKGEDFEGLNLDELQQLEKRLEAGLKRVIKTKEKLITDEIVALQKRGMKLEDESRQLKQKMSMMYKGKSPSMVDKDIAIQEAVSLDSMNNVCSCNSCPSLDDDSSDISLKLGLSFPD* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0437 226 Coils Coil 93 113 - -
Lan11g0437 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan11g0437 226 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Lan11g0437 226 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan11g0437 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan11g0437 226 Coils Coil 120 143 - -
Lan11g0437 226 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Lan11g0437 226 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan11g0437 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan11g0437 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan11g0437 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan11g0437 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan11g0437 226 Coils Coil 149 169 - -
Lan11g0437 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan11g0437 226 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 220 - -
Lan11g0437 226 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Lan11g0437 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0437 Lan-Chr11 3208002 3213707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0437 1 224 MADS-box Gene Family AT2G22540 48.536 2.18e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan11g0437 K-box 9.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0437 - - zju:107421277 260.381