Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0436 ATGGGTGGTGCACCTTCTTTCATGCCATTATTCATCATCACCATCATTCTAATTCACCCCAACATTGCAAATGCCACTGATAATATCAGAGAAACTTCTCAAATTTCTAAACTTGATCGTGATGATGATAATGGTGGCATTGCCACCATATCACCCACGGTATCAACACATAATTATGATCATGATCACCAAGGTAAGAAATCAAAGGCATTGAAACCAAGCATAGTGATTGTGGTGTGTGTTTTAACCTCCGTTTGTTCCATCACCTTTATGATTCTTCTCTATATCAAACACTGCATTCGTGGTAACACCTCTTCAACTTCGAGAAACCTAAATAATTCCTCTGAGGAAAGAAAGAACTCTGGTGTTGAACGTTCCATGGTTGAATCATTACCCATTTTCAGATTTGGTTCTCTCAGGGGTCAAAAGGAAGGATTGGAATGTGCCATTTGTCTTAAGAGGTTCGAGGATCATGAGCTTCTTAGACTCCTCCCAAAATGCAACCATGCATTTCATGTTGAATGTGTTGACATGTGGCTTAACGAGCATTCAACTTGTCCTCTTTGTCGTGACAAGGTTGACCTAGAAGATATTGTTCTCATTGACCAACAACAACTTCCACCACCTTCATTGATACGTCATCAAAGCAATGCCCAAAATGAAGGATTTGATATTAACACCACACCGCAACCACTACCACGACCACAATTACACAATCCGAACCAAGTAATGTCTCGGAGACATTCATGGGTTGGGAAGAGTGACAATGGAATTATAGAAATTAGTCTAGAGGATATAGAAGAAACATCATCGCATAGAAGGTCATTGGATGATAGTGTGGTGAGGAGAATAGAGGGTAAGAGAAAAGATGGGAAATTGGCTACACATGAAAACAAGAGATCAAAGAAACGTGAGAAGGATCATAGGTTAGAGCACCGTATAATTGTATCTAGTCCCACTACAAAATCATCACAATGTCCTAATGTCTACCAAAAACGGTGGAGCAATATTGAACCGTGTGATTTGTTGTGCTTAACTCCAGATATGATTATTAGTGAAAATTATACAAGAACAGCATCATCATCATCCCAACAACAACATCAGAATAGAAGGGTGTCATTGCCATTCTTCATCCGAAACCAGAATGTTGAAGATGAAATGGAGAAAGGTGGGATGAATATGAATATGAATATGAGGACTGTTTCAGAGACAACAGGGATGAATGGGAATAGAGGGAGAGGGAGAGGGAGAGAGAGGGAAAAAGAGGAGGAGCGACAAGAGGGTGCAATTAAGAGGTGGTTGGCTTGGATTTCAAAAACACATTCTCAGTAA 1332 0.4002 MGGAPSFMPLFIITIILIHPNIANATDNIRETSQISKLDRDDDNGGIATISPTVSTHNYDHDHQGKKSKALKPSIVIVVCVLTSVCSITFMILLYIKHCIRGNTSSTSRNLNNSSEERKNSGVERSMVESLPIFRFGSLRGQKEGLECAICLKRFEDHELLRLLPKCNHAFHVECVDMWLNEHSTCPLCRDKVDLEDIVLIDQQQLPPPSLIRHQSNAQNEGFDINTTPQPLPRPQLHNPNQVMSRRHSWVGKSDNGIIEISLEDIEETSSHRRSLDDSVVRRIEGKRKDGKLATHENKRSKKREKDHRLEHRIIVSSPTTKSSQCPNVYQKRWSNIEPCDLLCLTPDMIISENYTRTASSSSQQQHQNRRVSLPFFIRNQNVEDEMEKGGMNMNMNMRTVSETTGMNGNRGRGRGREREKEEERQEGAIKRWLAWISKTHSQ* 444
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0436 443 MobiDBLite consensus disorder prediction 412 427 - -
Lan11g0436 443 SUPERFAMILY RING/U-box 136 195 - -
Lan11g0436 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Lan11g0436 443 MobiDBLite consensus disorder prediction 287 301 - -
Lan11g0436 443 Pfam Ring finger domain 147 190 IPR001841 -
Lan11g0436 443 CDD RING-H2_EL5_like 147 190 - -
Lan11g0436 443 PANTHER RING-H2 FINGER PROTEIN ATL43 53 442 - -
Lan11g0436 443 MobiDBLite consensus disorder prediction 36 66 - -
Lan11g0436 443 MobiDBLite consensus disorder prediction 287 310 - -
Lan11g0436 443 SMART ring_2 148 189 IPR001841 -
Lan11g0436 443 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Lan11g0436 443 MobiDBLite consensus disorder prediction 402 427 - -
Lan11g0436 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 53 442 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan11g0436 Lan-Chr11 3204776 3206327 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0436 68 436 C3H Transcription Factor Family AT5G05810 37.028 1.49e-60 201
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0436 K19041 - lang:109360354 842.802