Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0423 ATGGAAACTTTGGATAATAATTCAAACCAATATGCTACCATTTCTTCTAATTCATCATCAACATCATCTTCTGGAGGTTTGAATAGTAATGATAACAATGCTAACAGTAATAGCAGTGCTGGCACTGTAACCTGGTATGGTATGAATTTTCCCTCTGTGAGAACCTTGCGTTCTCCACTTTCCTATTTGTTGGAGCGCTCTGGAATCCTAACCTCAGGCCCTGAGCCCGAGGCAGCGATTGTCAACAATGGAGTTACCGGTTCGGAGTTACGGTCTCAGCTTCAAACTCAATCACTTAATGGTGGTGGTGGTGCTGCTGCTGCTGATATTGAAACACTCTGCACCAATAGTACTGGTGAAGTTGCAATAAGGATCATTGGAGCTGGAGAGAATGATCACAATGTTGTAGGGTCTAGTTCTCTTACGTCGTCGTCTTGGAATCCGCGTGGAGAAGTTGGTTATGGTGATATGATGAGTGATAGAGATGGAAGGCCTGGATTGGTTGATGATGGTGGTGGTGATGATCATGGCGAAATTGCGAATGGTGAGAGGGTTCATCGGGTGTCTTCGTCTTCGTCATTGGCTGGTAATGGACAAGTTGGTGGGGATGCTGCTGGGAATGGCGTAGAAAGTAATGGTAGGGAGTCGTCATCCTACCAGAGGTTTGATATTCAGCAGATTGCGAAGTGGATTGAACAGATTCTGCCTTTTTCGCTCTTGTTATTCGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAAAGGCAGACAGCATTAAAGGGAGATAGGAGAGTATCTATTCTTGTTGGCATCTCAATTGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTATGCCCACTGGTCATGATTCCTCCAAAAGCAACACCATTCTGGCATTCAATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCTGCAATGGCTTTCAAGTGTTTTCTGCTTATATATTACAAAAATGGCAGAGGTCATAACTTCCGTCGGCAGGCTCAAATGTTGACTCTGGTTGAGTACACGCTACTGTTGTATCGTGCCTTGTTGCCAACTCCAGTTTGGTACCGTTTTTTCCTGAACAAGGATTATGGCAGTCTCTTTTCGTCACTGATCACTGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTTAAATGTTTTTTTTCTGCTGTGAAAGCGTTATCAAGAAAGGATGTTAACTATGGGGTTTGTGCCACAATGGAACAGGTTAATGCTGCTGGTGATCTATGTGCTATATGCCAGGAGAAGATGCATGCCCCCATCTTGTTGCACTGTAAACACATTTTCTGCGAAGAGTGTGTATCAGAATGGTTTGAGAGAGAAAGGACTTGTCCACTTTGTAGAGCATTGGTAAGACCTGCTGATCTGAAAACCTTTGGAGATGGATCTACAAGTCTACTATTTCAGTTGTTTTAA 1539 0.425 METLDNNSNQYATISSNSSSTSSSGGLNSNDNNANSNSSAGTVTWYGMNFPSVRTLRSPLSYLLERSGILTSGPEPEAAIVNNGVTGSELRSQLQTQSLNGGGGAAAADIETLCTNSTGEVAIRIIGAGENDHNVVGSSSLTSSSWNPRGEVGYGDMMSDRDGRPGLVDDGGGDDHGEIANGERVHRVSSSSSLAGNGQVGGDAAGNGVESNGRESSSYQRFDIQQIAKWIEQILPFSLLLFVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRRVSILVGISIAFMLHVMCIYWWYRNDDLLCPLVMIPPKATPFWHSIFIILVNDTLVRQAAMAFKCFLLIYYKNGRGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLITGLYLTFKLTSVVEKVKCFFSAVKALSRKDVNYGVCATMEQVNAAGDLCAICQEKMHAPILLHCKHIFCEECVSEWFERERTCPLCRALVRPADLKTFGDGSTSLLFQLF* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0423 512 ProSitePatterns Zinc finger RING-type signature. 466 475 IPR017907 -
Lan11g0423 512 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 512 - -
Lan11g0423 512 MobiDBLite consensus disorder prediction 136 212 - -
Lan11g0423 512 MobiDBLite consensus disorder prediction 1 35 - -
Lan11g0423 512 SMART ring_2 451 488 IPR001841 -
Lan11g0423 512 CDD RING-HC_RNFT1_like 450 489 - -
Lan11g0423 512 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 17 512 IPR044235 GO:0061630|GO:1904294
Lan11g0423 512 ProSiteProfiles Zinc finger RING-type profile. 451 489 IPR001841 -
Lan11g0423 512 Pfam Zinc finger, C3HC4 type (RING finger) 449 491 - -
Lan11g0423 512 MobiDBLite consensus disorder prediction 155 183 - -
Lan11g0423 512 SUPERFAMILY RING/U-box 442 494 - -
Lan11g0423 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 498 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0423 Lan-Chr11 3093548 3098872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0423 56 512 C3H Transcription Factor Family AT5G01960 59.179 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0423 - K22379 nnu:104612968 588.186