Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0409 ATGGGTGAAGCGCGTGGGGAGGACGCGCCAGCCTTGTCTTTGAATTCACTGCCATTAGGGTTTCGGTTTAGACCAACGGATGAGGAGCTTATTGATTACTATTTGCGTCAGAAGGTCAATGGAAATGGTGATGATGTTTGGGTCATTCGGGAAATTGATGTCTGTAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGGTGCGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGATCGCAAGTATCCAAACGGTCATCGTTTGAACCGAGCAACAACTCATGGATATTGGAAGGCAACGGGCAAGGATCGCAAAATTAAGTCTGGCTCAACCTTGATTGGAATGAAGAAGACTCTAGTTTTCTATACTGGCCGTGCTCCTAAAGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGACCCACCCTAAAGGAACTTGATGGTACCAATCCTGGACAGAACCCATATGTCATTTGCCGATTATTTAAGAAACAAGATGAGAGTCTTGAAGTTTCTAATTGTGATGAAGTGGAGCACACTGCTTCAACTCCTACAACTGCCAATCACACTCCAGAAGAAATACACTCTGATCCATCGCTGGTTCCAGTATCTTCATCACAGGTTACCGAAGATGATAAGCAGCTAGCAGTTATTGCTGAGAACTCTGAGGAAGCAATATCCGACATTATAACCTCAGTCAATTTCCATGGTGACAGATGTGATGTTTATGGTGCACATAATCAAGTTGCAGAACCATCTGCAGAGGCAGCTCAGCCATTCAACTGGGACTTACTTAATCCGCCACTTGAGCAATTGGATGACAAGTTATTCTCCCCAGCTCGTGTCCATGTTCTGCCAGAATTTTATTATCAAGCAAACAATGAATCAGATTATTATAACTCATTTATTGATGCCTACTGCTACAATGAGTCTATAAGCCAAAAGGTGAACCCTGCCTTGTTTAATGTTTACGACAGTGGATTGTTCATTAAATCAGATGTGCAAATAGCCAATACAACGTCTTATTCTATGCTGCAGCATATACAAGCATTTCATGCTGCTTATCCTGAGGAGGCAATCGATAAAATGACTCCTTTGTTACCGAGCACGGGCAACGATTTCTGCAGCTCCATTGCCTCTGACCATAGGGGCAATGACCATAAAAGTAATGTAGGATTGTTGCAAAATGATTCCTATCTGTTTTCCTCAAATAATGTTAGTATGGGGGAAGTGTACAATGGGGTCAATGGTTATGAGCAAGCTAGAAACTTTGATACAGTTGTTAATGGGGATACTGGAATCAGGATAAGGACTCGGCAAGTACGAAATGAACAGCCAAACATCAACACCATGGTGCAATTGCAAGGTTTTGCTAACAGGAGAATACTATTGGGAGGATTTGTTATGCATCCGCATGGTTGTTCTGATGAGACAGCAAAAGATGGGAGTTATTCACCAGAAGACCATAGTTCAAAATCAACTATTGCTGGGAAGAGTGAAGCTTCAGAAAATCATGCTGCTGGTGAGAGCAGCGCTGTTACTGGTGATGATGAACTAGAGAAGGCATTGGCAGAGTTTCCTGACATGAGTAGGATTTGTCTGCTACAAGTTTCTTCTGCAGAGTCCATGGGAGTAGAAGACTTAACATTGAAAAGAATGGTCTTCGATGCGTCAAAGACTTCCTCCAATCGTGTCACGTGGTCTTTTGTTTTTGCAGTTTCAGCCATTGTCCTGGTCCTACTAGTATTCCTTTTTAATATATGGGGATATCTTCAATATTAA 1791 0.4266 MGEARGEDAPALSLNSLPLGFRFRPTDEELIDYYLRQKVNGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVICRLFKKQDESLEVSNCDEVEHTASTPTTANHTPEEIHSDPSLVPVSSSQVTEDDKQLAVIAENSEEAISDIITSVNFHGDRCDVYGAHNQVAEPSAEAAQPFNWDLLNPPLEQLDDKLFSPARVHVLPEFYYQANNESDYYNSFIDAYCYNESISQKVNPALFNVYDSGLFIKSDVQIANTTSYSMLQHIQAFHAAYPEEAIDKMTPLLPSTGNDFCSSIASDHRGNDHKSNVGLLQNDSYLFSSNNVSMGEVYNGVNGYEQARNFDTVVNGDTGIRIRTRQVRNEQPNINTMVQLQGFANRRILLGGFVMHPHGCSDETAKDGSYSPEDHSSKSTIAGKSEASENHAAGESSAVTGDDELEKALAEFPDMSRICLLQVSSAESMGVEDLTLKRMVFDASKTSSNRVTWSFVFAVSAIVLVLLVFLFNIWGYLQY* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0409 596 MobiDBLite consensus disorder prediction 181 207 - -
Lan11g0409 596 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Lan11g0409 596 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 452 - -
Lan11g0409 596 MobiDBLite consensus disorder prediction 480 517 - -
Lan11g0409 596 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Lan11g0409 596 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 12 452 - -
Lan11g0409 596 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Lan11g0409 596 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Lan11g0409 596 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0409 Lan-Chr11 2994186 2997950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0409 11 200 NAC Transcription Factor Family AT4G35580 69.474 7.76e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan11g0409 NAM 2.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0409 - - lang:109356058 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0409 11 2994186 2997950 Lan9g1168 9 19107534 19110788 LSH
Lan11g0409 11 2994186 2997950 Lan15g0583 15 13217545 13221215 PCT
Lan11g0409 11 2994186 2997950 Lan3g0774 3 14430821 14436813 PCT
Lan15g0583 15 13217545 13221215 Lan11g0409 11 2994186 2997950 PCT
Lan3g0774 3 14430821 14436813 Lan11g0409 11 2994186 2997950 PCT