Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0404 ATGGGTCTTCCAAATCTTCCATCTTCATCTGAAGGAATATTTTCTTGTTTTTTGGGAAATAGTGTGTTTCCAATATCCATATTTAAAGGCCTTGTTAAGATAATCTTACACATTATTGGTATCAATCTTTCATCATCATCATCATCAGAAACTTCATCCCCTACAACAGCTACCTCCCAATACCGACCTGGGTCATTTGAATTCCTTGTTAATTACTGTAGTAATACTTACATAGAAGAGATTCGAAGCCAGACACCAACAATAAGGTTTGACAGTGTGTGTTGTCAGCAACAAGCTGAAGTTGAATGCATTGTATGCCTTACTCAGTTTGGACCAGAATCAGAGATAAACCATTTATCTTGTGGCCATATCTTCCACAAAGTGTGCTTGGACAAGTGGTTGAACTATTGGAACAGTACATGCCCACTTTGCAGGGCTCCCTTAATGCCTGAAGTTGAAGATGAGACACTTTGCTTTTAG 480 0.3854 MGLPNLPSSSEGIFSCFLGNSVFPISIFKGLVKIILHIIGINLSSSSSSETSSPTTATSQYRPGSFEFLVNYCSNTYIEEIRSQTPTIRFDSVCCQQQAEVECIVCLTQFGPESEINHLSCGHIFHKVCLDKWLNYWNSTCPLCRAPLMPEVEDETLCF* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0404 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 151 IPR013083 -
Lan11g0404 159 Pfam Ring finger domain 102 145 IPR001841 -
Lan11g0404 159 SMART ring_2 103 144 IPR001841 -
Lan11g0404 159 PANTHER - 1 158 IPR044249 -
Lan11g0404 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 158 - -
Lan11g0404 159 SUPERFAMILY RING/U-box 96 151 - -
Lan11g0404 159 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0404 Lan-Chr11 2939540 2941060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0404 1 157 C3H Transcription Factor Family AT2G04240 50.633 1.51e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0404 K16285 - gmx:100786803 197.978