Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0388 ATGAGTGGTACCAATAGTAAAACCTCTGAATTTGGCTTGGTTATGGAGGATGAGTATGGAAGACAAGAAGAGCTGCACCATAAAATTTCTGCCTTGCTTGAATTTTCAGCTGCTGATGATCTAGTTGGTTTCAAAGATGTGGTCGAAAAGGAGGATCACGACATTGATGGGGTGGGGTTGTGGTATGGAAGGAGGGTAGGCTCAAACAAAGTGGGTTATGAAGCAAGGACTCCTCTCATGATTGCTTCTATGTTTGGAAGCCAAGGTGTTTTGACTTATATTCTTAGAACAGGTCGTGTTGATGTTAACCGGGTTACTGGGTCCGATGGGGCTACTGCTCTTCATTGTGCCGTTGCTGGTGATTCCCCTGCATCCCTTGAAGTTGTCAAGCTCTTGCTTGATGCATCTGCAGATGTTAATGCTGTTGATGCCAATGGTAACCGACCCCGTGACTTGATTGTCTCTGTGGCTAATTCCATCTTCAATTCAAGGAAAAGGATACTGCAAGCCTTGCTGGAAGGTGCGTATGGTACTGATCAGGCATGTCTTACATTTGAGGAGATAGTAGGCCAAATTGAGGAACAGCAAAGGCAAGATGCGAACACACCTCGTGCTTCTAAAGATGAGACTGAGAAAAAAGGCTATCCTGTTGATCTCTCCCTTCCAGACATAAAGAATGGGATGTACAGTACCGATGAGTTTAGGATGTATACATTCAAAGTGAAACCTTGTTCAAGGGCTTACCCTCACGATTGGACCGAATGCCCTTTTGTCCACCCAGGGGAGAATGCAAGGCGGCGTGATCCAAGGAAATATCCTTATAGCTGTGTCCCTTGCCCCGAGTTTCGGATGGGATCGTGCAGCAAGGGGGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGTTGGCTTCACCCTGCCCAGTACCGGACACGGCTTTGTAAGGATGAGAGTGCATGCACGAGAAGAGTTTGCTTCTTTGCTCATAAGCTTGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGCTCTGCTATTCCCTCTCTCAGATCATATTCATCTACCACTTCTTTGGAGATGGGTTCAGTTAGACCAATCGCTCTCAGTTCTCCATCTGTCATTACGCCACCTTCATCAACACCACCTTTAAGTCCATGTGGAGCATCTTCTCCTATCGTTGGAGCCATGTGGCAGACTCAACATAATGTTGCAGCCCCTACCCTGCAGCTTCCGAAGAGTAGATTGAAGACTGCATTAACTGCTAGAGATATTAATTTAGATATTAAATTGATTGAAGTTGAAAATCATAGAGTTAGGCAGCAGCTAATGATGGATGAAATATCTAGTCTTTCTGCCCCTTCTAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCCTGTTTCTTTTGGTGATCATGCTGGCCAATTAAATAGGCTCTCTGAAGTGAAGCCTACTAACCTTGACGACATTTTTGGGTCAATTGATCCACCAATTTTGCCTAAGTTCCATGGAATGTCACTTGACGGTGCAGGATCTCCGTTACAATCTCCAACTGGAATCCAGATGCATCAGAATGTGACCCAGCAGCCTCAATGCTATTCAAATGTGATCGGGTCACCACCCTTTAGGGGTGATCAATCTGGTGCAGTGGCCTCTGTGTCTATGAATCCAAGAACAGCTGCCTCTTCAAAATGGAGCCGGAGCTTTATCGAGTGTAGTGTGGTGAATCGACATTCTGAGTTTCCTTCCCCTTTTACCCCTGAAGCAGCAAAGCATACCTTTTCTGATTGGGGTTCCCCTGATGGAAAACTAGACTGGGCCATAAACGGAGAAGGGCTGAATAAACTGAGGAAATATGCTTCCTTTGGATTCCAAAGCAGCATTACTCCTTTAACGATAGCTACAACCACACTGGCTGAAAACATTGATGAACCGGATGTGTCTTGGGTTCATTCACTTGTGAAGGATGATCCATTGCTGGAATCCGATCAGTTCAGTGCTGAAGATCAGCAACAACAGCTGCAATACCATCTTCACAATGGAAGAAATGCAGTTCCAACTTGGTTTGAGCAAATGTACATGGAGCAGGAGCAGATTGTGGCGTGA 2106 0.4539 MSGTNSKTSEFGLVMEDEYGRQEELHHKISALLEFSAADDLVGFKDVVEKEDHDIDGVGLWYGRRVGSNKVGYEARTPLMIASMFGSQGVLTYILRTGRVDVNRVTGSDGATALHCAVAGDSPASLEVVKLLLDASADVNAVDANGNRPRDLIVSVANSIFNSRKRILQALLEGAYGTDQACLTFEEIVGQIEEQQRQDANTPRASKDETEKKGYPVDLSLPDIKNGMYSTDEFRMYTFKVKPCSRAYPHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRMGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESACTRRVCFFAHKLEELRPLYASTGSAIPSLRSYSSTTSLEMGSVRPIALSSPSVITPPSSTPPLSPCGASSPIVGAMWQTQHNVAAPTLQLPKSRLKTALTARDINLDIKLIEVENHRVRQQLMMDEISSLSAPSNWKNSMPNSPSFPVSFGDHAGQLNRLSEVKPTNLDDIFGSIDPPILPKFHGMSLDGAGSPLQSPTGIQMHQNVTQQPQCYSNVIGSPPFRGDQSGAVASVSMNPRTAASSKWSRSFIECSVVNRHSEFPSPFTPEAAKHTFSDWGSPDGKLDWAINGEGLNKLRKYASFGFQSSITPLTIATTTLAENIDEPDVSWVHSLVKDDPLLESDQFSAEDQQQQLQYHLHNGRNAVPTWFEQMYMEQEQIVA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0388 701 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 699 - -
Lan11g0388 701 Pfam Ankyrin repeats (3 copies) 72 143 IPR002110 GO:0005515
Lan11g0388 701 Gene3D - 274 336 - -
Lan11g0388 701 SMART c3hfinal6 308 331 IPR000571 GO:0046872
Lan11g0388 701 SMART c3hfinal6 273 299 IPR000571 GO:0046872
Lan11g0388 701 MobiDBLite consensus disorder prediction 200 217 - -
Lan11g0388 701 MobiDBLite consensus disorder prediction 194 217 - -
Lan11g0388 701 SUPERFAMILY Ankyrin repeat 53 157 IPR036770 -
Lan11g0388 701 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Lan11g0388 701 Gene3D - 28 173 IPR036770 -
Lan11g0388 701 SMART ANK_2a 74 104 IPR002110 GO:0005515
Lan11g0388 701 SMART ANK_2a 109 141 IPR002110 GO:0005515
Lan11g0388 701 ProSiteProfiles Zinc finger C3H1-type profile. 273 300 IPR000571 GO:0046872
Lan11g0388 701 PANTHER UNKEMPT FAMILY MEMBER 18 699 IPR045234 -
Lan11g0388 701 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0388 Lan-Chr11 2844865 2854014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0388 24 656 C2H2 Transcription Factor Family AT5G12850 38.358 1.49e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan11g0388 Ank_2 1.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0388 - - aprc:113846970 1012.68