Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0383 ATGACGTGTTCCGTCGTGGTTTCAAACTCTCCGGTGTTCTCACCTTCATCTTCTCTTTTTTGCAACATTTCTCCCTCTCCAGATTCTCATACCCTTTCTCTTTCTCATCTCAAACCTTCTTCTTCTGCAACCACGTCGTCTTGTTCTTCTCCTTCTAATTCTACTTCTTCGCCTTCTTCACCTTTTCGGCTTCGCCTTTCTAAGCCACATACTGTCTCATCTACCTCCCCTAACGGCCCCGTTTTGAAGAGGAAGAGGCCGGGCAGGCTTGATATTCCGGTTTCTTCTCTTAGCTTTGGGGTTCCGGCGACGCCGTCCGCGGTGGCGAGGGATGTGATGGAGGCTGAGGGAGACGGGTTTTCTGTGTACTGTAAGAGGGGTAGGAGGGAGTATATGGAGGATCGTTATTCTGCTGCTGATAATCTACGCGGCGAATCCAAGTTGGCTTTTTTTGGTGTATTTGATGGGCATGGAGGTGCAAAAGCTGCAGAATTTGCTGCAAAGAACTTGGAAAATAATGTCCTAGATGAAGTTATCATTAGCGATGAAGATGATGTCGGGGAGGCAGTGAAGCGTGGTTACCTCAACACTGATTCTGATTTCTTAAAAGAGGATCTCAATGGTGGTTCTTGCTGTGTGACAGCACTGATTAGAAACGGTAACCTTGTGGTGTCCAACGCCGGTGATTGCCGCGCTGTCATCAGCAGAAACGGGGTTGCAGAGGCCCTAACATCTGATCACCGACCTTCAAGGGAAGATGAAAAGGAGAGAATTGAGACTCTGGGTGGCTATGTTGATTTATGCCGCGGTGTTTGGAGGATTCAAGGATCTCTTGCTGTGTCTAGGGGAATCGGAGATCGCCACATGAAACAATGGGTGACAGCAGAACCCGAGACCAAAGTTCTCCGAATTGAACCCGAACACGACTTATTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATAAGGAAGCAGTAGATATTGCTCTCCCTTTTCTGATTGGGAACAAGAAACAACAACCATTGTTGGCTTGTAAAAAGCTAGTAGATTTGTCTGTTTCACGAGGCTCTATGGATGATACAAGTGTTATGCTAATCAAGTTGGAACACTATGTTTAA 1125 0.4631 MTCSVVVSNSPVFSPSSSLFCNISPSPDSHTLSLSHLKPSSSATTSSCSSPSNSTSSPSSPFRLRLSKPHTVSSTSPNGPVLKRKRPGRLDIPVSSLSFGVPATPSAVARDVMEAEGDGFSVYCKRGRREYMEDRYSAADNLRGESKLAFFGVFDGHGGAKAAEFAAKNLENNVLDEVIISDEDDVGEAVKRGYLNTDSDFLKEDLNGGSCCVTALIRNGNLVVSNAGDCRAVISRNGVAEALTSDHRPSREDEKERIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHMKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNKEAVDIALPFLIGNKKQQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0383 374 ProSiteProfiles PPM-type phosphatase domain profile. 119 370 IPR001932 -
Lan11g0383 374 CDD PP2Cc 119 370 IPR001932 -
Lan11g0383 374 MobiDBLite consensus disorder prediction 32 80 - -
Lan11g0383 374 SMART PP2C_4 109 368 IPR001932 -
Lan11g0383 374 SUPERFAMILY PP2C-like 120 371 IPR036457 -
Lan11g0383 374 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 373 - -
Lan11g0383 374 PANTHER PROTEIN PHOSPHATASE 2C 3 373 IPR015655 GO:0004722|GO:0006470
Lan11g0383 374 MobiDBLite consensus disorder prediction 32 87 - -
Lan11g0383 374 Pfam Protein phosphatase 2C 120 362 IPR001932 -
Lan11g0383 374 Gene3D - 111 373 IPR036457 -
Lan11g0383 374 ProSitePatterns PPM-type phosphatase domain signature. 150 158 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0383 Lan-Chr11 2792905 2795104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0383 1 374 PP2C-type Phosphatase Gene Family AT2G30020 61.750 1.56e-160 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0383 K17506 - gmx:100797934 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1008 2 21143834 21146069 Lan11g0383 11 2792905 2795104 LSH
Lan11g0383 11 2792905 2795104 Lan9g1203 9 19359043 19361324 LSH
Lan2g1008 2 21143834 21146069 Lan11g0383 11 2792905 2795104 PCT
Lan9g1203 9 19359043 19361324 Lan11g0383 11 2792905 2795104 PCT
Lan11g0383 11 2792905 2795104 Lan2g1008 2 21143834 21146069 PCT
Lan11g0383 11 2792905 2795104 Lan9g1203 9 19359043 19361324 PCT