Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0370 ATGGCTTCTTCGTCTGGTAGCATAGACACTTCTGCAAACTCTTACAACAACTTCACTTTCTCTACACACCCTTTCATGACAACATCATTTTCTGACCTTTTATCTTCTCCCATAGATGATATTAATAATAATAATAATAAAACTCGTGGTGGTGGTGGTGGTTTATCAGATCGAATAGCTCAGAGAACTGGTTCTGGTGTACCAAAATTCAAGTCTATACAACCTCCTTCACTTCCTTTATCTCCTCCTCTCTTTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTAAGCCCTGCTGAACTTCTTGACTCTCCTGTTCTCTTAAACTCTTCTCACATTTTGCCATCTCCAACAACGGGAGCGTTTGCTGCTAAGGGTTACAATGATAGAAAGTACAATTCTGGTGGAAACCAACAAATTATCAAAGAAGAAGAGAAAAACTTCTCAAACTTCTATTTTCAAACCCAAGCAGGACCTCCTCCTGCATCTACTGCAACTTTTCAATCTTCAAATGCCACAGTTCAAACTCAACAGCCATGGAGTTATCAGCAAGCTACAAAACAGGATAGTTTTTCTTCAGGGATGAGTATGATGAAAACTGAAAACTCTTCTTCAATGCAGAGCTTTTCCCCTGATATTGCAGGTGTCAGAACTAATAAGAACAACAGTTATCAACAACAGCCACAAGTTCAGACCTTAAGTAGAAGATCAGATGATGGTTACAATTGGAGAAAATATGGTCAAAAACAAGTGAAAGGGAGTGAAAACCCAAGGAGTTATTACAAATGCACATACCCTAATTGTCCTACAAAAAAGAAGGTAGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTACAAGGGTAGTCATAACCATCCTAAACCACAGAACACTAGGAGAAACTCATCATCTTCCTCTTCTGTTTCAATTATTCCTTCAAATCTCATCACCTCAGATATCCAAGATCAATCATATACAACACATGGTAGTGGACAAATGGATTCTGTTGCCACACCAGAGAATTCATCAATATCAATAGGAGATGAAGATTATGAGCAGAGTTCTCAAAAGGGTAGATCAGGTGGGGATGAGTATGATGAAGATGAACCTGATTCAAAAAGATGGAAAGTTGAAGGTGATAGCGAGGGTATATCAGGTCCTGGAAATAGAACAGTGCGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATTGATATCCTTGATGATGGGTACAGATGGAGGAAATATGGACAGAAAGTAGTCAAGGGTAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCCAGGATGTCCAGTGAGGAAGCATGTGGAAAGAGCCTCACATGACCTAAGAGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGATGTCCCTGCAGCACGTGGCAGTGGCAACCATTCAGTAAATAGACCAATGCCAAACAACAACACTTCAAACCCTACAAATATTGCAGCCACTACTGCCTTAAGGCCCACGGCATTGAACCACCCCACTAACAACAATTCTCTTCAGAGTCTTAGACCAGAAGGTCAATCACCCTTCACACTAGACATGCTGCAGAGCCCTGGAAGTTTTGGATTCTCCGGGTTCGGGAATCCAATGGGATCTTACATCAATAAGCAACAACTTTCTGACAATGTATTTTCTTCCAGAGCCAAGGAGGAGCCCAGAGATGACATGTTCCTTGATTCTTTACTATGCTGA 1740 0.4098 MASSSGSIDTSANSYNNFTFSTHPFMTTSFSDLLSSPIDDINNNNNKTRGGGGGLSDRIAQRTGSGVPKFKSIQPPSLPLSPPLFSPSSYFAIPPGLSPAELLDSPVLLNSSHILPSPTTGAFAAKGYNDRKYNSGGNQQIIKEEEKNFSNFYFQTQAGPPPASTATFQSSNATVQTQQPWSYQQATKQDSFSSGMSMMKTENSSSMQSFSPDIAGVRTNKNNSYQQQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQNTRRNSSSSSSVSIIPSNLITSDIQDQSYTTHGSGQMDSVATPENSSISIGDEDYEQSSQKGRSGGDEYDEDEPDSKRWKVEGDSEGISGPGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNHSVNRPMPNNNTSNPTNIAATTALRPTALNHPTNNNSLQSLRPEGQSPFTLDMLQSPGSFGFSGFGNPMGSYINKQQLSDNVFSSRAKEEPRDDMFLDSLLC* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0370 579 ProSiteProfiles WRKY domain profile. 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 MobiDBLite consensus disorder prediction 288 311 - -
Lan11g0370 579 MobiDBLite consensus disorder prediction 37 51 - -
Lan11g0370 579 SUPERFAMILY WRKY DNA-binding domain 237 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 MobiDBLite consensus disorder prediction 37 73 - -
Lan11g0370 579 SUPERFAMILY WRKY DNA-binding domain 402 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 552 IPR044810 GO:0003700
Lan11g0370 579 MobiDBLite consensus disorder prediction 160 260 - -
Lan11g0370 579 MobiDBLite consensus disorder prediction 354 382 - -
Lan11g0370 579 ProSiteProfiles WRKY domain profile. 405 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 MobiDBLite consensus disorder prediction 160 238 - -
Lan11g0370 579 MobiDBLite consensus disorder prediction 293 311 - -
Lan11g0370 579 Pfam WRKY DNA -binding domain 239 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 Pfam WRKY DNA -binding domain 411 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 MobiDBLite consensus disorder prediction 326 393 - -
Lan11g0370 579 SMART WRKY_cls 410 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 SMART WRKY_cls 238 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 Gene3D WRKY domain 223 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 Gene3D WRKY domain 397 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan11g0370 579 MobiDBLite consensus disorder prediction 326 353 - -
Lan11g0370 579 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 45 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0370 Lan-Chr11 2674289 2677742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0370 67 578 WRKY Transcription Factor Family AT2G38470 46.402 5.85e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan11g0370 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0370 K13424 - gmx:100127385 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1031 2 21360251 21363912 Lan11g0370 11 2674289 2677742 LSH
Lan11g0370 11 2674289 2677742 Lan9g1229 9 19574023 19576986 LSH
Lan4g0064 4 841540 846019 Lan11g0370 11 2674289 2677742 PCT
Lan2g1031 2 21360251 21363912 Lan11g0370 11 2674289 2677742 PCT
Lan9g1229 9 19574023 19576986 Lan11g0370 11 2674289 2677742 PCT
Lan11g0370 11 2674289 2677742 Lan4g0064 4 841540 846019 PCT
Lan11g0370 11 2674289 2677742 Lan2g1031 2 21360251 21363912 PCT
Lan11g0370 11 2674289 2677742 Lan9g1229 9 19574023 19576986 PCT