Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0369 ATGATGCTTTCAGGGGACATACCTCCGAACCAAACCATTTACATCAAGAATCTCAACGAAAAAATTAAGAAAGAAGAGTTGAAGAGATCTCTGTATTGCCTATTCTCTCAATATGGAAGAATATTGGATGTTGTTGCTTTAAAAACACCTAAGCTTCGAGGACAGGCATGGGTTTGCTTTAGTGAAGTCACTGCTGCCAGTAATGCGGTGCGGCAAATGCAAAACTTCCCTTTTTATGACAAACCTATGCGAATTCAATATGCTAAAACAAAATCAGATTGTATTGCTAAAGAAGAGGGAAGTTTTGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGATAGAAAACGTCGGGAAGATACACAGCAATCTTCTGTGCCAAATGGAACACATGGTGCAAGTAATGGTGGCCCAACTGCCTCATTCCGTCAAGGATCTAGTGCCCAAGAAGCATCTCCTCCCAACAATATTTTGTTCATAGAGAATTTGCCTCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATCGAAGCAAAGCCTGGTATCGCATTTGTAGATTTTGAAGATGAGGTGCAATCATCTATGGCTATGCAGGCTCTTCATGGCTTCAAAATCACCCCTCAAAATGCCATGATTATAACCTTTGCTAAGAAGTAG 699 0.4063 MMLSGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKADRKRREDTQQSSVPNGTHGASNGGPTASFRQGSSAQEASPPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNAMIITFAKK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0369 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 83 IPR000504 GO:0003723
Lan11g0369 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Lan11g0369 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 90 IPR000504 GO:0003723
Lan11g0369 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Lan11g0369 232 SMART rrm1_1 12 86 IPR000504 GO:0003723
Lan11g0369 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 5 232 - -
Lan11g0369 232 Gene3D - 147 232 IPR012677 -
Lan11g0369 232 MobiDBLite consensus disorder prediction 98 155 - -
Lan11g0369 232 Gene3D - 5 114 IPR012677 -
Lan11g0369 232 MobiDBLite consensus disorder prediction 125 155 - -
Lan11g0369 232 SUPERFAMILY RNA-binding domain, RBD 9 220 IPR035979 GO:0003676
Lan11g0369 232 MobiDBLite consensus disorder prediction 98 124 - -
Lan11g0369 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Lan11g0369 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 5 232 - -
Lan11g0369 232 CDD RRM1_U1A_like 12 89 - -
Lan11g0369 232 CDD RRM2_U1A_like 156 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0369 Lan-Chr11 2668085 2670909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0369 4 232 Eukaryotic Initiation Factors Gene Family AT1G71770 20.851 1.53e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0369 K11094 - gmx:100805822 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1032 2 21368802 21372161 Lan11g0369 11 2668085 2670909 LSH