Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0362 ATGGAGAAGTCAATGTTAAAGGTGCTCTCTAATGGGATATCCACATTTTTGCATTTGTCATTTTCTGGAAACATTTACCCAGAACCTGTATCAAAGTATTACCGAAAGGCAGAGGAGATACTAAATTCGCTGAAGCCGATTATTGATGCAAATCATTATTCTGATTTTGCTTCTGATGAAGTGCTTGATAAGTTACTCGAGGCACTTGATCAAACTATTGACGAGTTGAGAGAGCTTATTGAGCACTGGCATCCATTATCTAGCAAACTTTACTTTGCTATGCAAGTTGAACCCTTGATATCTAGAATTCGGGCTTTGGGGCTCAATATTTTAGGACAGCTGAAGGGTCCACAAGAGTGTCTCCCTGATGATATGGGACATGAAACATCATCAGTCATTAAAGAAGCTATCATGGAACAACAGGAAAGTATAGGACCCGGTTCAGAGGTCCTGGCAAAGATTGCAGAGAACCTGGGACTAAGGACTAATCAAGCAGTTCTGATTGAGGCTTTAGCCCTTGAAAATTTGAAGGATAACGCTGAACAAACTAAAAAGACTGCAGAAGCTGAATATATTGATCAATTGATATCTGTTGTAACTCATATGCATGAGCATCTTATTATGCTCAAGCAAGCTGAGTATGAGAGCTCTATCCCAGTTCCAGTACCAGCTGATTTCTGCTGTCCTCTCTCTTTGGAGTTGATGAAAGATCCAGTCATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAATAACTGGATCAATCTTGGGCTTAATGTTTGTCCAAAGACACATCAGACTCTAGTTCACCCCAACTTAATACCTAATTACACCGTGAAGGCATTTATTGTTAACTGGTGTGAATCAAACAATGTCAAGTTAGTTGACCCCATAAAGTCCACAAATTTAAATCAACCATCAGTCGATAATGGGTTGGTGGAGTCTGGATTAACCAAGTTATCGCAAGTTATCACTTCTGATGGAACCAACCAAGTGGGAGCATCACCATCACATCCCCTTTCAGCTTCAGAAGGTTCCTTAAGTGGCATGGTCAATGGCCAGTGTGTGGATCTTGTAAGAATATCTTCCACAGATTCAGATGACAGGTCTGCTAACACCGATGAAGGGAGTGCGAATTCAGTTGACCAATCACTAATGTCGCCGTCTCGAAGGGAATCCTCTCATGCCTTTTGCTCAGAACAGTCTCAAACCCATGTTAGAACTGCCTCCAATTCCTGTGCAATCTCTAGTGCAAATTTTCCACAAGGTGACAACAACAGTTCTCCTCTGATGTCAACCAGTCCAGTCCACGGCCAAGGTGCTTCAGGGGAATTAAATCCTGCGCCAGAGGCTGCCACCATGCCCATTCTTCATAGAGAGCCTGACTTTCCACCTCAGTTGGTAGAGCCAAGTTCTAGATTCCAAATTGTTGGTCGGCGGCCATTAGAGAGGTTTGTTCCTAGGATAGTGCCTTCTCCTTCAATTGAAACAAGAGCCGATCTTTCTGGTATTGAAACCGAGGTTCGGAAATTGGTTGAGAACTTGAAGAGCTCTTCTCTTGATACTCAGAGGGATGCAACATCAGAACTCCGCTTACTTGCTAAGCACAATATGGATAACCGGATTGTGATTGCAAACTCTGGAGCCATTAGCTTATTAGTTGATCTGCTTCAATCAACAGATACAGTAATTCAGGAAAATTCTGTCACAACACTTCTTAACTTATCAATCAATGATAATAACAAAACTGCAATCGCAAATGCTGGTGCAATTGAGGCTCTGATTCATGTCCTTGAGACAGGGAGTCCAGAAGCCAAGGAGAACTCTGCTGCTACTCTTTTTAGCATATCAGTGATTGAGGAAAACAAGATCAGGATAGGGAGGTCTAGGGCAATTGAACCACTGGTTAATTTATTAGGGAATGGAACACCTAGAGGGAAGAGAGATGCTGCTACTGCATTGTTTAATTTGTCAATACTTCCCGAAAACAAGAATCGGATTGTGGAAGCTGGTGCTGTGAAGCACCTTGTTGACTTAATGGACCCTGCAGCTGGTATGGTTGATAAAGCAGTAGCTGTTTTAGCAAATCTTTCCACCATATCAGAAGGGAGTACTGAGATTTTTCAGCAAGGCGGGATTCCCGTTCTAGTCGAGGTTGTTGAATTGGCTTCTGCGAGAGGAAAGGAGAATGCGGCTGCGGCTCTTGTACATTTATGTTCAAACAATCCCAGATATTTAAACATTGTGCTCCAAGAAGGAGCTGTACCACCATTAGTAGCTTTGTCACAATCAGGCACTCCAAGGGCCAAAGAAAAGGCCCTGGCTCTCCTTAATCAAATCAGAAACCAGAGACATAATGGTGCTGGGAGGGTTTGA 2382 0.4291 MEKSMLKVLSNGISTFLHLSFSGNIYPEPVSKYYRKAEEILNSLKPIIDANHYSDFASDEVLDKLLEALDQTIDELRELIEHWHPLSSKLYFAMQVEPLISRIRALGLNILGQLKGPQECLPDDMGHETSSVIKEAIMEQQESIGPGSEVLAKIAENLGLRTNQAVLIEALALENLKDNAEQTKKTAEAEYIDQLISVVTHMHEHLIMLKQAEYESSIPVPVPADFCCPLSLELMKDPVIVASGQTYERAFINNWINLGLNVCPKTHQTLVHPNLIPNYTVKAFIVNWCESNNVKLVDPIKSTNLNQPSVDNGLVESGLTKLSQVITSDGTNQVGASPSHPLSASEGSLSGMVNGQCVDLVRISSTDSDDRSANTDEGSANSVDQSLMSPSRRESSHAFCSEQSQTHVRTASNSCAISSANFPQGDNNSSPLMSTSPVHGQGASGELNPAPEAATMPILHREPDFPPQLVEPSSRFQIVGRRPLERFVPRIVPSPSIETRADLSGIETEVRKLVENLKSSSLDTQRDATSELRLLAKHNMDNRIVIANSGAISLLVDLLQSTDTVIQENSVTTLLNLSINDNNKTAIANAGAIEALIHVLETGSPEAKENSAATLFSISVIEENKIRIGRSRAIEPLVNLLGNGTPRGKRDAATALFNLSILPENKNRIVEAGAVKHLVDLMDPAAGMVDKAVAVLANLSTISEGSTEIFQQGGIPVLVEVVELASARGKENAAAALVHLCSNNPRYLNIVLQEGAVPPLVALSQSGTPRAKEKALALLNQIRNQRHNGAGRV* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0362 793 MobiDBLite consensus disorder prediction 365 405 - -
Lan11g0362 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 296 IPR013083 -
Lan11g0362 793 CDD RING-Ubox_PUB 226 268 IPR045210 -
Lan11g0362 793 ProSiteProfiles U-box domain profile. 221 295 IPR003613 GO:0004842|GO:0016567
Lan11g0362 793 Pfam Armadillo/beta-catenin-like repeat 580 619 IPR000225 GO:0005515
Lan11g0362 793 Pfam Armadillo/beta-catenin-like repeat 541 578 IPR000225 GO:0005515
Lan11g0362 793 Pfam Armadillo/beta-catenin-like repeat 623 660 IPR000225 GO:0005515
Lan11g0362 793 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 333 - -
Lan11g0362 793 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 488 789 - -
Lan11g0362 793 Pfam U-box domain 222 292 IPR003613 GO:0004842|GO:0016567
Lan11g0362 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Lan11g0362 793 SMART arm_5 539 579 IPR000225 GO:0005515
Lan11g0362 793 SMART arm_5 621 661 IPR000225 GO:0005515
Lan11g0362 793 SMART arm_5 743 784 IPR000225 GO:0005515
Lan11g0362 793 SMART arm_5 580 620 IPR000225 GO:0005515
Lan11g0362 793 SMART arm_5 662 701 IPR000225 GO:0005515
Lan11g0362 793 SMART arm_5 702 742 IPR000225 GO:0005515
Lan11g0362 793 MobiDBLite consensus disorder prediction 330 350 - -
Lan11g0362 793 MobiDBLite consensus disorder prediction 419 442 - -
Lan11g0362 793 MobiDBLite consensus disorder prediction 419 444 - -
Lan11g0362 793 SMART Ubox_2 225 288 IPR003613 GO:0004842|GO:0016567
Lan11g0362 793 MobiDBLite consensus disorder prediction 375 405 - -
Lan11g0362 793 PANTHER U BOX DOMAIN-CONTAINING 488 789 - -
Lan11g0362 793 PANTHER U BOX DOMAIN-CONTAINING 8 333 - -
Lan11g0362 793 SUPERFAMILY ARM repeat 510 782 IPR016024 -
Lan11g0362 793 Coils Coil 62 82 - -
Lan11g0362 793 Coils Coil 170 193 - -
Lan11g0362 793 Gene3D - 500 790 IPR011989 -
Lan11g0362 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Lan11g0362 793 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 714 IPR000225 GO:0005515
Lan11g0362 793 SUPERFAMILY RING/U-box 211 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0362 Lan-Chr11 2629205 2633644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0362 180 792 U-box Gene Family AT2G23140 58.750 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0362 - - gmx:100813786 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0362 11 2629205 2633644 Lan9g1237 9 19663118 19668088 LSH
Lan16g0533 16 6197740 6208889 Lan11g0362 11 2629205 2633644 PCT
Lan11g0362 11 2629205 2633644 Lan16g0533 16 6197740 6208889 PCT