LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan11g0357	ATGTATTCCATGAAGGAGAATAAAGAAGATTTCAAGTTAGAACATGGTTATGTGGAAACTGATCCATCTGGTCGTTATGGCCGGTTTGAAGATGTTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATTGATGAGGTCCTTGGAATAGAGGTAGCATGGAATCAGGTTAAACTCAATGAGGCACTTCGTACACCGGACGATTTGAATCGGCTTTACTCAGAGGTTCATCTCCTCAGCACCCTCAAACACCGGTCAATCATAGAATTCTATACCTCTTGGATTGATGTTGATAACAAGGCCTTCAACTTTGTTACAGAAATGTTCACATCAGGATCCCTCAGAGTATACCGGAAGAAATATACGGGAGTTAGCATAAAAGCAATAAAAAGTTGGGCACGCCAAATCTTACAAGGTCTTGTTTATCTTCATGGACATGATCCACCAGTAATCCATAGGGACCTCAAATGTGATAATATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTAGGACTAGCTGCAATTCTCCACGGTTCTCAGCCAGCCCACAGTGTTATAGGTACCCCAGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTATTGGAATTGTTTACATCTGATTATCCATATAGTGAATGTTCTAACCCGGCACAGATTTACAAGAAAGTGATATCGGGTAAGCTACCAATAGCTTTTTATCGGATTGAAGATATGGAAGCTCAGAAGTTTATTGGAAAATGCCTAGGACCTGCATCAAAAAGACCATCCGCAAAAGATTTGTTAATTGACCCTTTTCTTATGTCTGATGAATCATCATCACCAGCTAAGTTTGGAATTCAAAAGCCTCTTTTGAATAATATTGAGATGGCAAAACTTCACTTGAGTGATAACTTAACTAGGACTGAAATGAAGATAATAGGGAAGCTGAATCCCGGAGATGATACAATCTTTCTCAAAGTGCAGATTCCTGATAAGGATGGTTCTGTTAGGAATGTATTTTTCCCCTTTGAAATTTCCACTGACACCCCCATTGATGTTGCAACTGAAATGGTAAAAGAGTTAGAGATTGCTGATAGGGAGCCTTTTGAAATAGCAAATATGATTGAAGGAGAGATATCTACTCTGCTACCACATAACAGGGAAATTAACCGTTCCGATGCCTGCAATACATTCAGTTATGAAGATGATGATTATGACAATGGACCTCATCATCATTACCGCACATTCTCTTCTTGTTCATCATCCCAAGAATCAATATCAGGTTTAGACAGTGGAAATTATTGGCCCCATGACGATTTGCTTGATGATACCAGTTCCAGATGTTGGTCGCAAGCGACATATTCCGACTTGAATTATTATTCTATGGATGATCAGGAGTACAATGTGTCTTCTATCAGAAAAGATAAACTACCTATCATTAAAAGTCACAAGTGTACAAGGTTTTCTCCTAATGAAGAGTTCAGCAATTGCAACCAATGTAAAGTTGTAATAGGATCATTGACACCTTCTACTAGTAAAAGTAAGAATGTGATCGACAATCGCAGACTGACACGGAACAAGTCATTGATTGATCTAAGGAGCCAACTATTACACAAATCGCTGGTCGAGGAGGTTCACAGAAGACGGTTATTTCAGACAGTTGGTTCTGTGGAAAATATTGGATATCAGGCACCTTGTGATGTTTCTACACAAAATGTCTCTTCAAGGAGTGGCAAGCAAGAAAAACTTAAGAGATGA	1794	0.3919	MYSMKENKEDFKLEHGYVETDPSGRYGRFEDVLGKGAMKTVYKAIDEVLGIEVAWNQVKLNEALRTPDDLNRLYSEVHLLSTLKHRSIIEFYTSWIDVDNKAFNFVTEMFTSGSLRVYRKKYTGVSIKAIKSWARQILQGLVYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLELFTSDYPYSECSNPAQIYKKVISGKLPIAFYRIEDMEAQKFIGKCLGPASKRPSAKDLLIDPFLMSDESSSPAKFGIQKPLLNNIEMAKLHLSDNLTRTEMKIIGKLNPGDDTIFLKVQIPDKDGSVRNVFFPFEISTDTPIDVATEMVKELEIADREPFEIANMIEGEISTLLPHNREINRSDACNTFSYEDDDYDNGPHHHYRTFSSCSSSQESISGLDSGNYWPHDDLLDDTSSRCWSQATYSDLNYYSMDDQEYNVSSIRKDKLPIIKSHKCTRFSPNEEFSNCNQCKVVIGSLTPSTSKSKNVIDNRRLTRNKSLIDLRSQLLHKSLVEEVHRRRLFQTVGSVENIGYQAPCDVSTQNVSSRSGKQEKLKR*	598

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan11g0357	597	Gene3D	Transferase(Phosphotransferase) domain 1	110	292	-	-
Lan11g0357	597	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	6	591	-	-
Lan11g0357	597	ProSiteProfiles	Protein kinase domain profile.	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lan11g0357	597	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED	6	591	-	-
Lan11g0357	597	Pfam	Protein kinase domain	30	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lan11g0357	597	Gene3D	Phosphorylase Kinase; domain 1	11	108	-	-
Lan11g0357	597	CDD	STKc_WNK	25	285	-	-
Lan11g0357	597	SMART	serkin_6	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lan11g0357	597	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468
Lan11g0357	597	SUPERFAMILY	Protein kinase-like (PK-like)	29	286	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan11g0357	Lan-Chr11	2582043	2586270	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan11g0357	17	588	MAP Kinase Kinase Kinase	AT5G58350	59.247	0.0	632

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Lan11g0357		Pkinase	3.4e-46	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan11g0357	K08867		-	gmx:100272203	882.478

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lan2g1047	2	21715928	21720487	Lan11g0357	11	2582043	2586270	LSH
Lan2g1047	2	21715928	21720487	Lan11g0357	11	2582043	2586270	PCT
Lan16g0541	16	6292048	6296853	Lan11g0357	11	2582043	2586270	PCT
Lan11g0357	11	2582043	2586270	Lan2g1047	2	21715928	21720487	PCT
Lan11g0357	11	2582043	2586270	Lan16g0541	16	6292048	6296853	PCT

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