Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0355 ATGGAGTTTCGAGTTTGCATGAATGGTTTGTGTCGTGGCGTTGGGTATGAACGTGAATGGAAGAAGGGTTGGCCTCTGGAATCTGGTGGATTCGCCCGTCTCTGCAACAATTGCGGATCTGCTTATGAGAATTCAATTTTCTGTGAGAAATTCCATCCTAAGGAAACTGGTTGGAGGGAGTGCAGCTATTGCAACAAGTCTATCCACTGTGGATGTATAGTATCATTGTCTTTGTTCAAGCACCTTAGTTTTGGAGGCATAGGCTGTGTTAACTGTGTGAAGACTTCCCAACACCGTCTGAGACTGGACATTCAAAGTCCTAATGTGTTTTTGACGTCAACCAAACATAATGCAAGTGATCGACATGTTGCTCATATTGATGGTAGACTGTTGGTGGATAGTGTTGATGAAGGGAAACATATGCAACTGTGTAGAATTGTTGAAGGTAGTGAATCAAGCCATTGCCCTCAACATCAGAGAGATGACATATTTTCATTTATTGCTCCAAACAACCAAGAAGTTAAGTGTTCCTTCAGGGAAGCAGATGCAAGATTTTCAAATGTGATGAAACCATCAAATCATTCATTAACATTTACTTCATTACAAAACAGTAGACCAACATGGGAGAAAAAAAATATGCATGATGCACTTGCATTGAGTATGTCTTTGGGAACCCCATCACAGAACACTGTCCTGTCTTCTGCTACAGAGAAGGAAGAAGGGAGACTTGAGAGCAAAACATCGTCTCCCTTTCATCAAAGGAAAATAGCTCGCTCTATATTGCCCAAACCATTGAAGACAGGGTTAACCACGAATCTGGAAACAAATAGTGGGATGATTTCTGAGGCACAAGTTCTCCGGCCACCTGCTGAGTATAGCGGCAAGCATCAGTTACTTCCTCGGTACTGGCCCAGGATAACTGATCAAGAACTGGATAAATTGTCTGTGGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCCAAAGCCTGTGCAGAGGCTTATTTTCCTCCTATTTCGCATTCAGGAGGTCTTCCTTTGCCCTTCCAAGATGTGAAGGGGAATGATTGGACACTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACACCTTTCATACAGTCCATGCAATTAAGTGCCGGTGATACTGTGACATTTAGTCGGATAGATCCTGGTGGGAAATTTGTTATGGGTTTCAGAAGGGCATCAAATATAGATACACAGAATGCCTCTGAGTCTGCTCAATCTAATGACATCTCAATTAAGGAAAGTATTCCTGGTCCAACTCAGAATCCGCACACAATAAGTAATTATCCTGATCTCCAGTCGAAGAAAGAGATTGTGGAACCTCATTTAAATGGGCATCCAGAACATCTGCATTTGGGTAATGGTTCTGATAAAAAAAGCGAGGATATGACAAAAAATGATTTATTGCAGCAACCAATTTCAGTTCCATTGAAGAAGAGGACTCGTAATATTGGGCCTAAAAATAAGAGGTTACTCATTCACAGTGAAGATGCAATGGGGTTGAGACTTACATGGGAAGAAGCGCAAAACTTGCTTTATCCACCGCCCAGGGTCAAGCCAAACATTGTAACAATTGAGGACCAAGAAATTGAAGAGTACCATGAACCCCCGGTTATTGGAAAAAGAACTATATTCAGTGCTTGTCCATCTGGGAGGAAAGAACCGTGGGCTCAATGTGATGATTGCTCTAAATGGCGCAGGGTTCCAGGAAATGTTCTTCCTCCCAAATGGACATGCTTTGATAATGATTGGGATGCAAGCAGGTCTTCGTGTTCTACACCAGAGGAGCAGAGTCCAGATGAAGTAAATAATCTTCTGAGAACCAGCAAAGTTTCTAAGAAGAAGCGTAGAAGGATGGAAAAGAGTGAGACAATTGAAGAACATGGACCCTCTGGTTTAGAGGCTCTAGCCAATGCAGCAGTTTTAGGGGATATTCTTGTTGACCTTGCTGAGCCATCATCTGGAGTCACGACGAAACATCCAAGGCACCGTCCTGGATGCACTTGCATTGTGTGCATCCAGCCTCCAAGTGGAAAAGGTAAACATAAACCGACCTGTAATTGCGTTGTGTGTATGACTGTGAAATGCCGCCTCAAAACCCTCATGATGCGCAATAAGAAACGCCAATCGGAACGTGAGGCAGATGTGTCTGCTTCCCATAAAGATCAAATTCAGAAGACGGGTGAGCCAGATGCCAATGAAGCATTGAAAGGTGATACGAGTCGATGA 2328 0.4317 MEFRVCMNGLCRGVGYEREWKKGWPLESGGFARLCNNCGSAYENSIFCEKFHPKETGWRECSYCNKSIHCGCIVSLSLFKHLSFGGIGCVNCVKTSQHRLRLDIQSPNVFLTSTKHNASDRHVAHIDGRLLVDSVDEGKHMQLCRIVEGSESSHCPQHQRDDIFSFIAPNNQEVKCSFREADARFSNVMKPSNHSLTFTSLQNSRPTWEKKNMHDALALSMSLGTPSQNTVLSSATEKEEGRLESKTSSPFHQRKIARSILPKPLKTGLTTNLETNSGMISEAQVLRPPAEYSGKHQLLPRYWPRITDQELDKLSVDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISHSGGLPLPFQDVKGNDWTLQFRFWPNNNSRMYVLEGVTPFIQSMQLSAGDTVTFSRIDPGGKFVMGFRRASNIDTQNASESAQSNDISIKESIPGPTQNPHTISNYPDLQSKKEIVEPHLNGHPEHLHLGNGSDKKSEDMTKNDLLQQPISVPLKKRTRNIGPKNKRLLIHSEDAMGLRLTWEEAQNLLYPPPRVKPNIVTIEDQEIEEYHEPPVIGKRTIFSACPSGRKEPWAQCDDCSKWRRVPGNVLPPKWTCFDNDWDASRSSCSTPEEQSPDEVNNLLRTSKVSKKKRRRMEKSETIEEHGPSGLEALANAAVLGDILVDLAEPSSGVTTKHPRHRPGCTCIVCIQPPSGKGKHKPTCNCVVCMTVKCRLKTLMMRNKKRQSEREADVSASHKDQIQKTGEPDANEALKGDTSR* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0355 775 MobiDBLite consensus disorder prediction 431 460 - -
Lan11g0355 775 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 766 - -
Lan11g0355 775 Gene3D - 587 640 - -
Lan11g0355 775 Pfam CW-type Zinc Finger 589 630 IPR011124 GO:0008270
Lan11g0355 775 MobiDBLite consensus disorder prediction 227 249 - -
Lan11g0355 775 SMART B3_2 326 427 IPR003340 GO:0003677
Lan11g0355 775 Pfam B3 DNA binding domain 326 426 IPR003340 GO:0003677
Lan11g0355 775 Gene3D - 304 430 IPR015300 -
Lan11g0355 775 MobiDBLite consensus disorder prediction 477 496 - -
Lan11g0355 775 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 766 - -
Lan11g0355 775 CDD B3_DNA 324 425 IPR003340 GO:0003677
Lan11g0355 775 MobiDBLite consensus disorder prediction 644 664 - -
Lan11g0355 775 SUPERFAMILY DNA-binding pseudobarrel domain 324 425 IPR015300 -
Lan11g0355 775 ProSiteProfiles Zinc finger CW-type profile. 583 632 IPR011124 GO:0008270
Lan11g0355 775 ProSiteProfiles B3 DNA-binding domain profile. 326 427 IPR003340 GO:0003677
Lan11g0355 775 MobiDBLite consensus disorder prediction 737 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0355 Lan-Chr11 2558055 2564886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0355 1 770 B3 DNA Binding Superfamily AT2G30470 46.931 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan11g0355 B3 2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0355 - - lang:109356710 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0355 11 2558055 2564886 Lan9g1244 9 19719897 19726853 LSH
Lan4g0273 4 4423388 4431074 Lan11g0355 11 2558055 2564886 PCT
Lan16g0551 16 6496808 6504565 Lan11g0355 11 2558055 2564886 PCT
Lan11g0355 11 2558055 2564886 Lan4g0273 4 4423388 4431074 PCT
Lan11g0355 11 2558055 2564886 Lan16g0551 16 6496808 6504565 PCT