Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0353 ATGTCCGTACAATCAACACTGAAGCTCCCGACATCAAGTTCTAATTTTGAGGGCAACCCATTATGCAAAACAATGAATAAACCTCAAAGGAAGGTGGTTCGGATCATAGTGACAGACCATGATGCTACTGATTCAGAATCTTCAAGTGACGAAGAACAGAAAAAGAAGCAAAATAGAGTGAAGAGGGAAATCACACAGATTACTATGCACTTTCCCTTTTATGATTCTCCTTCTTCCTCTTCCTGTTCTCGCTCTTGCTCTTCCTTTTCTTCTTCGTCAGAACAGTGTTGTAAGAAGTACAAGAGACCAAAGAAATCACCGTCCTCCACCGCCAGTGCCGGCGTGCGCCACAGCAACAAGTTTCGCGGCGTCCGTCAACGGCCGTGGGGACGGTGGGCCGCTGAGATTCGTGACCCCAATCGTAGAAAACGGGTCTGGCTTGGTACCTTTGACACGGCGGAGGAGGCTGCCACCGTGTACGACAAGGCGGCAGTGAAACTTAAAGGATCCAACGCCATCACTAACTTCCCCGCACCGGCGAATGAGAATGAAGTGATGACGCAGGCTACCGCCGGCGAAGTTCAGAGTGTTGACGGTGGCTCGTCGTATTCAAACGCGGTGGCGTCACCTACTTCTGTTTTGCCTTACCACGGTGATTCGACGCCGTTCGACGGTTTCAGTTACGGCGACGTAGATGCGTTTGGTTTCGACATCGACATGGCGTTAAGTTTGCCGGACGTAAACGTTATGCTGACGTGTCAGCGGTTTGGGAAGGAGGAAGTGTTCGGTGAATTTGACCTTGACGAGTTTATGACATGGCCTTCATAA 828 0.5 MSVQSTLKLPTSSSNFEGNPLCKTMNKPQRKVVRIIVTDHDATDSESSSDEEQKKKQNRVKREITQITMHFPFYDSPSSSSCSRSCSSFSSSSEQCCKKYKRPKKSPSSTASAGVRHSNKFRGVRQRPWGRWAAEIRDPNRRKRVWLGTFDTAEEAATVYDKAAVKLKGSNAITNFPAPANENEVMTQATAGEVQSVDGGSSYSNAVASPTSVLPYHGDSTPFDGFSYGDVDAFGFDIDMALSLPDVNVMLTCQRFGKEEVFGEFDLDEFMTWPS* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0353 275 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Lan11g0353 275 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Lan11g0353 275 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Lan11g0353 275 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Lan11g0353 275 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Lan11g0353 275 MobiDBLite consensus disorder prediction 1 60 - -
Lan11g0353 275 MobiDBLite consensus disorder prediction 33 60 - -
Lan11g0353 275 MobiDBLite consensus disorder prediction 99 120 - -
Lan11g0353 275 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Lan11g0353 275 Gene3D AP2/ERF domain 119 178 IPR036955 GO:0003700|GO:0006355
Lan11g0353 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 219 - -
Lan11g0353 275 PIRSF PTI6 1 275 IPR017392 GO:0003700
Lan11g0353 275 MobiDBLite consensus disorder prediction 1 22 - -
Lan11g0353 275 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Lan11g0353 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 23 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0353 Lan-Chr11 2540740 2542349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0353 23 217 AP2-EREBP Transcription Factor Family AT4G27950 43.781 1.54e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan11g0353 AP2 7.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0353 K13434 - gmx:100817278 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1052 2 21800188 21801973 Lan11g0353 11 2540740 2542349 LSH
Lan2g1052 2 21800188 21801973 Lan11g0353 11 2540740 2542349 PCT
Lan11g0353 11 2540740 2542349 Lan2g1052 2 21800188 21801973 PCT