Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0335 ATGTCACACTCACTCTTCACACTTACCATTCTCTTCTTCACACTCTCTTCATTCGTAACCTCTCACTCCCCTTCTTCGTTGTCTTCTTCTTCTTCTTCCTTCTCATATTCCCAACCTCAACCTTCTTCCTCTTCTCCTTTGATCTCCGAATGGCAATCCGCACACGCCACCTACTACGCCGCCTCCGATCCACGTGACGCCGTCGGCGGCGCGTGCGGATACGGCGATTTAATCAAAGTCGGTTACGGTCAGGCCACGGTAGGGTTGAGCGAGGTGCTGTACGAGCGTGGCCAGATCTGTGGCGCGTGCTTCGAGGTGCGTTGTGTTGATGACCTAAAGTGGTGTATACCTGGAACCTCTATCATTGTTACCGCTACTAATTTCTGTGCTCCGAACTATGGCTTCACATCTGAGGGTGGTGGACACTGTAATCCTCCAAATAAGCACTTTGTTCTACCGATTGAGGTTTTTGAGAAGATCGCTATCTGGAAAGCAGGGAACATGCCGGTGCAGTATCGCAGGATAAATTGCAGAAGGGAAGGAGGTATCCGATTTACAGTCACTGGTTCTGGTATTTTCATTTCAGTCCTGATCAGCAATGTTGCTGGCCATGGAGACTTAATAGCTGTCAAGGTTAAGGGCTCAAGAACTGGTTGGCTTCCAATGGGTCGGAATTGGGGTCAAAACTGGCATGTCAATGCTTTACTTCAGAACCAGCCTCTTTCATTTGAGATTACAAGCAGTGATGGGAAAACAGTTACATCTTATAATGTTGCTCCCAAGGATTGGAGCTTTGGACAAACCTTTGAAGGCAAGCAATTTGATACTTAA 831 0.4765 MSHSLFTLTILFFTLSSFVTSHSPSSLSSSSSSFSYSQPQPSSSSPLISEWQSAHATYYAASDPRDAVGGACGYGDLIKVGYGQATVGLSEVLYERGQICGACFEVRCVDDLKWCIPGTSIIVTATNFCAPNYGFTSEGGGHCNPPNKHFVLPIEVFEKIAIWKAGNMPVQYRRINCRREGGIRFTVTGSGIFISVLISNVAGHGDLIAVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEITSSDGKTVTSYNVAPKDWSFGQTFEGKQFDT* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0335 276 Pfam Lytic transglycolase 87 172 IPR009009 -
Lan11g0335 276 Gene3D - 36 178 IPR036908 -
Lan11g0335 276 PANTHER EXPANSIN-A13 32 275 - -
Lan11g0335 276 Pfam Expansin C-terminal domain 183 260 IPR007117 -
Lan11g0335 276 Gene3D - 182 274 IPR036749 -
Lan11g0335 276 PRINTS Expansin signature 81 95 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin signature 108 119 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin signature 228 249 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin signature 257 273 IPR002963 GO:0009664
Lan11g0335 276 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Lan11g0335 276 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Lan11g0335 276 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Lan11g0335 276 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Lan11g0335 276 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Lan11g0335 276 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Lan11g0335 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 69 182 IPR007112 -
Lan11g0335 276 SUPERFAMILY PHL pollen allergen 179 271 IPR036749 -
Lan11g0335 276 SMART dpbb_1 86 172 IPR007112 -
Lan11g0335 276 PANTHER EXPANSIN-A15 32 275 IPR002963 GO:0009664
Lan11g0335 276 SUPERFAMILY Barwin-like endoglucanases 47 200 IPR036908 -
Lan11g0335 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 271 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0335 Lan-Chr11 2425585 2428272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0335 50 276 Expansin Gene Family AT3G03220 82.819 9.46e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0335 - - gmx:100809568 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0590 16 7073566 7075784 Lan11g0335 11 2425585 2428272 PCT
Lan11g0335 11 2425585 2428272 Lan16g0590 16 7073566 7075784 PCT