Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0321 ATGGTTTTGTCTTGGACTAAAGGAAGAGTTTTTCGCCGTTCCCGTAAAGGGAAAGAGTTAAATTCTGTTGGTGATTTGGAGGTGGAGATTGCTATACCAACTCATTTTCGATGTCCGGTTACACTAGACATGATGAAGGACCCTGTGACACTGTCCACGGGGATAACCTACGATCGCGATAGCATTGAAAAGTGGTTCGAAGAAGGGAACAAGACGTGCCCGGTAACAAAGAGAGTCCTCACAACCTTTGACATGATTCCAAATCATGCATTAAGGAAGATGATTCAAGATTGGTGTGTAGAACATCGTTCTTTCGGGATTGAAAGGATCCCAACTCCTCGTATACCCGTGACACCGTACGAGGTTGAAAGCACGAGTACTAGGATCATGTCTTGTGCACAACATGGTGATGTAAACAAGTGTTTGGAATTGGTGAGGAAGATCAAAGCATGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAGTGACAACTGGTGCTTCTCTTGTTATTGTTAAGGTCTTTGAGTTTTTCTCATCACGTGGTGGATCCATTGAGAACAACAACTTTAGTGTCATGGAAGAGATTTTGGGTGTGTTGACATGGATGCGCCCTCTTTCACAAGAAGGTAAATCAATTTTAGGGTCATTGAGTTCTATGAGTTGCTTGGTTTGGTTCCTAAATGGTAAAGACCTTTCTTCAAGACAGAATGCTGCTTTGTTGCTCAAAGAAGTGCCCCTTGAGGCTTTGGAAAAAACTGAAGGAGTTTTTGAAGGTTTGGTTAAGATGATTGAAGAGCCTGTTGGGCATGCTGCTGCTACAAAAGCATGCTTGTCAATAATTTTCAAAATGGTTTCTTCATCTAAGAATAGAGAGTTAATAGCACAAAGATTTTTGGAATTGGGTTTGATTTCAATTTTGTTGGAGGCCCTTGTTGATGCTGAAAGAGGGACATGTGAGTTGGCCTTGGGGGTGCTTGATTGCATTTGTGATTTCAAACAAGGAAAAGAGATGGCTAAGGCAAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTTCTGAGGGTGTCTGAGTTGAGTTCTAGTTTTGCAGTTTCTATTGTTTGGAAGCTTTGTGACAAGACAGAGGAAGGGTTGTTGATTGAGGCACTTCAAGTTGGAGTGTTTCAGAAACTACTGGTTCTGCTGCAGGTAGGTTGTGGTGAGAGCACAAAGGAGAAGACTACTGAGTTGTTGAAATTTTTGAATGGTTATAGGAGCAAAGCTGAGTGTGTTGATTCTTCATCATTGGATTTCAAGAACCTTAAGAAGCCCTTCTAA 1320 0.4189 MVLSWTKGRVFRRSRKGKELNSVGDLEVEIAIPTHFRCPVTLDMMKDPVTLSTGITYDRDSIEKWFEEGNKTCPVTKRVLTTFDMIPNHALRKMIQDWCVEHRSFGIERIPTPRIPVTPYEVESTSTRIMSCAQHGDVNKCLELVRKIKAWGKESERNKRCIVTTGASLVIVKVFEFFSSRGGSIENNNFSVMEEILGVLTWMRPLSQEGKSILGSLSSMSCLVWFLNGKDLSSRQNAALLLKEVPLEALEKTEGVFEGLVKMIEEPVGHAAATKACLSIIFKMVSSSKNRELIAQRFLELGLISILLEALVDAERGTCELALGVLDCICDFKQGKEMAKANALTLPLVIKKLLRVSELSSSFAVSIVWKLCDKTEEGLLIEALQVGVFQKLLVLLQVGCGESTKEKTTELLKFLNGYRSKAECVDSSSLDFKNLKKPF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0321 439 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Lan11g0321 439 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Lan11g0321 439 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 439 - -
Lan11g0321 439 CDD RING-Ubox_PUB 36 77 IPR045210 -
Lan11g0321 439 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Lan11g0321 439 SUPERFAMILY RING/U-box 29 107 - -
Lan11g0321 439 PANTHER WDSAM1 PROTEIN 9 439 IPR045185 GO:0061630
Lan11g0321 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 107 IPR013083 -
Lan11g0321 439 SUPERFAMILY ARM repeat 130 397 IPR016024 -
Lan11g0321 439 Gene3D - 127 416 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0321 Lan-Chr11 2093647 2095277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0321 27 439 U-box Gene Family AT5G37490 45.952 1.21e-118 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0321 - - gmx:100790182 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1078 2 22029777 22031367 Lan11g0321 11 2093647 2095277 LSH
Lan11g0321 11 2093647 2095277 Lan9g1270 9 19946663 19948222 LSH