LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan11g0321	ATGGTTTTGTCTTGGACTAAAGGAAGAGTTTTTCGCCGTTCCCGTAAAGGGAAAGAGTTAAATTCTGTTGGTGATTTGGAGGTGGAGATTGCTATACCAACTCATTTTCGATGTCCGGTTACACTAGACATGATGAAGGACCCTGTGACACTGTCCACGGGGATAACCTACGATCGCGATAGCATTGAAAAGTGGTTCGAAGAAGGGAACAAGACGTGCCCGGTAACAAAGAGAGTCCTCACAACCTTTGACATGATTCCAAATCATGCATTAAGGAAGATGATTCAAGATTGGTGTGTAGAACATCGTTCTTTCGGGATTGAAAGGATCCCAACTCCTCGTATACCCGTGACACCGTACGAGGTTGAAAGCACGAGTACTAGGATCATGTCTTGTGCACAACATGGTGATGTAAACAAGTGTTTGGAATTGGTGAGGAAGATCAAAGCATGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAGTGACAACTGGTGCTTCTCTTGTTATTGTTAAGGTCTTTGAGTTTTTCTCATCACGTGGTGGATCCATTGAGAACAACAACTTTAGTGTCATGGAAGAGATTTTGGGTGTGTTGACATGGATGCGCCCTCTTTCACAAGAAGGTAAATCAATTTTAGGGTCATTGAGTTCTATGAGTTGCTTGGTTTGGTTCCTAAATGGTAAAGACCTTTCTTCAAGACAGAATGCTGCTTTGTTGCTCAAAGAAGTGCCCCTTGAGGCTTTGGAAAAAACTGAAGGAGTTTTTGAAGGTTTGGTTAAGATGATTGAAGAGCCTGTTGGGCATGCTGCTGCTACAAAAGCATGCTTGTCAATAATTTTCAAAATGGTTTCTTCATCTAAGAATAGAGAGTTAATAGCACAAAGATTTTTGGAATTGGGTTTGATTTCAATTTTGTTGGAGGCCCTTGTTGATGCTGAAAGAGGGACATGTGAGTTGGCCTTGGGGGTGCTTGATTGCATTTGTGATTTCAAACAAGGAAAAGAGATGGCTAAGGCAAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTTCTGAGGGTGTCTGAGTTGAGTTCTAGTTTTGCAGTTTCTATTGTTTGGAAGCTTTGTGACAAGACAGAGGAAGGGTTGTTGATTGAGGCACTTCAAGTTGGAGTGTTTCAGAAACTACTGGTTCTGCTGCAGGTAGGTTGTGGTGAGAGCACAAAGGAGAAGACTACTGAGTTGTTGAAATTTTTGAATGGTTATAGGAGCAAAGCTGAGTGTGTTGATTCTTCATCATTGGATTTCAAGAACCTTAAGAAGCCCTTCTAA	1320	0.4189	MVLSWTKGRVFRRSRKGKELNSVGDLEVEIAIPTHFRCPVTLDMMKDPVTLSTGITYDRDSIEKWFEEGNKTCPVTKRVLTTFDMIPNHALRKMIQDWCVEHRSFGIERIPTPRIPVTPYEVESTSTRIMSCAQHGDVNKCLELVRKIKAWGKESERNKRCIVTTGASLVIVKVFEFFSSRGGSIENNNFSVMEEILGVLTWMRPLSQEGKSILGSLSSMSCLVWFLNGKDLSSRQNAALLLKEVPLEALEKTEGVFEGLVKMIEEPVGHAAATKACLSIIFKMVSSSKNRELIAQRFLELGLISILLEALVDAERGTCELALGVLDCICDFKQGKEMAKANALTLPLVIKKLLRVSELSSSFAVSIVWKLCDKTEEGLLIEALQVGVFQKLLVLLQVGCGESTKEKTTELLKFLNGYRSKAECVDSSSLDFKNLKKPF*	440

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan11g0321	439	Pfam	U-box domain	32	103	IPR003613	GO:0004842\|GO:0016567
Lan11g0321	439	ProSiteProfiles	U-box domain profile.	31	105	IPR003613	GO:0004842\|GO:0016567
Lan11g0321	439	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	9	439	-	-
Lan11g0321	439	CDD	RING-Ubox_PUB	36	77	IPR045210	-
Lan11g0321	439	SMART	Ubox_2	35	98	IPR003613	GO:0004842\|GO:0016567
Lan11g0321	439	SUPERFAMILY	RING/U-box	29	107	-	-
Lan11g0321	439	PANTHER	WDSAM1 PROTEIN	9	439	IPR045185	GO:0061630
Lan11g0321	439	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	12	107	IPR013083	-
Lan11g0321	439	SUPERFAMILY	ARM repeat	130	397	IPR016024	-
Lan11g0321	439	Gene3D	-	127	416	IPR011989	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan11g0321	Lan-Chr11	2093647	2095277	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan11g0321	27	439	U-box Gene Family	AT5G37490	45.952	1.21e-118	352

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan11g0321	-		-	gmx:100790182	654.055

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan2g1078	2	22029777	22031367	Lan11g0321	11	2093647	2095277	LSH
	Lan11g0321	11	2093647	2095277	Lan9g1270	9	19946663	19948222	LSH

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