Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0316 ATGAGGGAAAGGAATAGGGAGGAGGAAGAGGAGGGTGAAGGGAAGCAAAAAACGACGCCGTCAACGAAATCCGGTGACCCTTCATCTTCTTCAACACCGTCGTCGTCTTCTTCTTCTTCCGATGAGAAAGAATACGAGGTTGAAGAACTGAGGGATCGGATAAAATCATCAAGAGGAAGCAGGTTCAATTTGATAGAGAAGGAGTTGAGTTGGCGAAGGAAGTTCAGTCGCGAATCCCTTATTGCTGGTTTCAAAGACTTCGTTATTCTTCCTCATAACTGGTGGTATCGGGTATGGTCACAATTCATCTTGTTATGGGCAGTGTACTCATCATTCTTCACTCCAATGGAGTTTGGATTTTTTCGTGGACTGCCTGAGAATCTCTTTGTACTGGATTTCATTGGACAAATATTCTTTCTTGTAGACATTGTTTTGCAGTTCTTTGTTGCTTATAGAGACAGTCAGACATATCGTATGGTCTACAAGCGTACCCCTATTGCTCTCAGGTATCTAAGATCTAGCTTTGTCCTTGATTTTCTTGGATGTATGCCTTGGGATATCATCTACAAGGCTTGTGGACGAAAAGAGGAAGTGAGATACCTTCTGTGGATCAGACTATATCGAGCGCGGAAAGTACATGAATTTTTATACAATTTGGAGAAGGATATACGTATCAATTACATTATTACTCGGATTGTGAAACTTCTAGTAGTTGAGCTCTACTGCACACATACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTACCTGCATCCCAAGAAGGGTACACATGGATAGGAAGTTTAAAAATGGGTGACTTTAGTTACTCAAATTTCAGAGAAATTGATCTTTGGAAGCGCTACACAACATCTTTGTATTTTGCTATAGTTACTATGAGTACTGTCGGCTATGGAGATATACATGCAGTAAATATGAGAGAGATGATATTCATAATGATATATGTATCATTCGACATGGTTATTGGTGCTTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGAAAAGTTCAGGGACAAGATGACAGATCTTGTGAAATATATGAACAGAAATAGACTTGGAAGGGATATCCGTGAACAAATAAAAGGCCATTTCCGCTTACAGTACGAGAGCAGCTACACTAACGCTGCTGTCATTCAGGAAATCCCCATTTCTATTCGATCTAAGATATCTCAAACATTATATTTGCCATACATCGAAAAAGTTCCACTTTTTAGGGGCTGCTCTTCAGAATTCATCTGTCAGATTATTACTAGGCTCCATGAGGAATTCTTTCTTCCTGGGGAAGTTATCATGGAACAAGGAAATGTTGTCGATCAACTATATTTTGTCTGTCATGGTGTTCTGGAGGAAGTAGGCACAGCTGAGGACGGATCTGAAGAAACTGTTTCATTTCTTCGACCCAACAGCTCATTCGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTTCGTGTTTGTGAACTGTGCAGACTTGTGCGGCTTGATAAACAATCATTTACAGATGTCCTTGATATATACTTTTATGATGGAAGGAAAGTACTAAACAACCTTCTAGAGGGAAAAGAGACTTTTCGGGGTAAGCAGTTGGAGTCAGACATCACATTTCATATTGGAAAGCAAGAAGCTGAACTTGCTTTGAAGGTAAACAGTGCAGCTTTTCATGGGGATATGTATCAGCTAAAAGGTTTGATTCGAGCTGGAGCTGACCCAAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATGTAGAGGACATGAGGATATCACACTTTTCCTTATTCAAGAAGGTGTAGACATCAATCTTAGAGATAACTTTGGAAACACACCCTTAATTGAAGCAGTTAAGAATGGACATGATCGAGTTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTATGAAGATAGAAAATGCTGGCAGCTTTTTATGTACAGCAGTTTTAAGGGGAGATTCAGATTACGTTAAAAGGCTTTTATCTAATGGCATGGATCCTAACTTGAAAGATTATGATTACCGAAGCCCTCTTCACATTGCTGCAGCTGAAGGTATCTACTTCATGGCAAAGTTGCTATTAGAAGCTGGAGCTAGTGTTTTTACCAAAGACAGATGGGGAAATACCCCACTTGATGAAGCCCGAATTTGTGGAAATAAGAACCTGATCAAGCTACTGGAAGAAGCAAAATCTGCTCAGTTGTCAGAATTCCCATGTCGTTCTCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACAGTGTTCCCCTTCCACCCTTGGGATCCAAAAGAACATAGAAAACATGGAATTGTGTTATGGATTCCACACACCATTGAAGAGCTAATCAAAACAGCAGCAGAGCATATAGACTTTCCTAGCGATTCTTTTATTTTATCAGAAGATGCTGGTAAAATTATTGATGTGGACATGATTAAAGATGGTCAGAAGCTGTATTTGGTCCATGAAACATCATAG 2529 0.3982 MRERNREEEEEGEGKQKTTPSTKSGDPSSSSTPSSSSSSSDEKEYEVEELRDRIKSSRGSRFNLIEKELSWRRKFSRESLIAGFKDFVILPHNWWYRVWSQFILLWAVYSSFFTPMEFGFFRGLPENLFVLDFIGQIFFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLRSSFVLDFLGCMPWDIIYKACGRKEEVRYLLWIRLYRARKVHEFLYNLEKDIRINYIITRIVKLLVVELYCTHTAACIFYYLATTLPASQEGYTWIGSLKMGDFSYSNFREIDLWKRYTTSLYFAIVTMSTVGYGDIHAVNMREMIFIMIYVSFDMVIGAYLIGNMTALIVKGSKTEKFRDKMTDLVKYMNRNRLGRDIREQIKGHFRLQYESSYTNAAVIQEIPISIRSKISQTLYLPYIEKVPLFRGCSSEFICQIITRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGTAEDGSEETVSFLRPNSSFGEISILCNIPQPYTVRVCELCRLVRLDKQSFTDVLDIYFYDGRKVLNNLLEGKETFRGKQLESDITFHIGKQEAELALKVNSAAFHGDMYQLKGLIRAGADPNKTDYDGRSPLHLAACRGHEDITLFLIQEGVDINLRDNFGNTPLIEAVKNGHDRVASLLVREGASMKIENAGSFLCTAVLRGDSDYVKRLLSNGMDPNLKDYDYRSPLHIAAAEGIYFMAKLLLEAGASVFTKDRWGNTPLDEARICGNKNLIKLLEEAKSAQLSEFPCRSQEFTDKMHPKKCTVFPFHPWDPKEHRKHGIVLWIPHTIEELIKTAAEHIDFPSDSFILSEDAGKIIDVDMIKDGQKLYLVHETS* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0316 842 PANTHER POTASSIUM CHANNEL SKOR-LIKE 38 841 - -
Lan11g0316 842 Pfam Ankyrin repeats (3 copies) 568 656 IPR002110 GO:0005515
Lan11g0316 842 Pfam Ankyrin repeats (3 copies) 663 744 IPR002110 GO:0005515
Lan11g0316 842 ProSiteProfiles Ankyrin repeat region circular profile. 593 625 - -
Lan11g0316 842 ProSiteProfiles Ankyrin repeat region circular profile. 626 657 - -
Lan11g0316 842 Pfam KHA, dimerisation domain of potassium ion channel 768 837 IPR021789 -
Lan11g0316 842 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
Lan11g0316 842 Gene3D Jelly Rolls 401 539 IPR014710 -
Lan11g0316 842 ProSiteProfiles Ankyrin repeat profile. 690 722 IPR002110 GO:0005515
Lan11g0316 842 ProSiteProfiles Ankyrin repeat region circular profile. 690 722 - -
Lan11g0316 842 Pfam Ion transport protein 97 342 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lan11g0316 842 MobiDBLite consensus disorder prediction 1 46 - -
Lan11g0316 842 Gene3D - 550 657 IPR036770 -
Lan11g0316 842 ProSiteProfiles cAMP/cGMP binding motif profile. 417 537 IPR000595 -
Lan11g0316 842 ProSiteProfiles KHA domain profile. 769 842 IPR021789 -
Lan11g0316 842 SUPERFAMILY cAMP-binding domain-like 345 534 IPR018490 -
Lan11g0316 842 PRINTS Ankyrin repeat signature 594 609 IPR002110 GO:0005515
Lan11g0316 842 PRINTS Ankyrin repeat signature 706 720 IPR002110 GO:0005515
Lan11g0316 842 MobiDBLite consensus disorder prediction 1 17 - -
Lan11g0316 842 Gene3D - 89 343 - -
Lan11g0316 842 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Lan11g0316 842 SUPERFAMILY Voltage-gated potassium channels 91 342 - -
Lan11g0316 842 MobiDBLite consensus disorder prediction 18 40 - -
Lan11g0316 842 PANTHER POTASSIUM CHANNEL AKT1 38 841 IPR045319 GO:0005249|GO:0006813
Lan11g0316 842 Gene3D Helix hairpin bin 344 400 - -
Lan11g0316 842 Pfam Cyclic nucleotide-binding domain 437 521 IPR000595 -
Lan11g0316 842 SUPERFAMILY Ankyrin repeat 566 745 IPR036770 -
Lan11g0316 842 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Lan11g0316 842 SMART ANK_2a 723 753 IPR002110 GO:0005515
Lan11g0316 842 SMART ANK_2a 626 655 IPR002110 GO:0005515
Lan11g0316 842 SMART ANK_2a 690 719 IPR002110 GO:0005515
Lan11g0316 842 SMART ANK_2a 657 686 IPR002110 GO:0005515
Lan11g0316 842 SMART ANK_2a 593 622 IPR002110 GO:0005515
Lan11g0316 842 PRINTS EAG/ELK/ERG potassium channel family signature 132 142 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan11g0316 842 PRINTS EAG/ELK/ERG potassium channel family signature 241 251 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan11g0316 842 PRINTS EAG/ELK/ERG potassium channel family signature 289 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan11g0316 842 PRINTS EAG/ELK/ERG potassium channel family signature 333 342 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan11g0316 842 SMART cnmp_10 417 535 IPR000595 -
Lan11g0316 842 CDD CAP_ED 417 531 IPR000595 -
Lan11g0316 842 Gene3D - 658 753 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0316 Lan-Chr11 2064405 2074736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0316 664 758 Ion Channels AT5G37500 33.058 1.10e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0316 K21867 - gmx:100814385 1436.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0316 11 2064405 2074736 Lan9g1274 9 19963549 19969772 LSH