Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0310 ATGAACTCTTTTCTCTCTCTCCTTTTCTTCCTATTCGCCATTGCCGCCGGCGAAGATATAGCTTCCGACAGAGTCGCTCTATTAGCCCTACGCTCCGCCGTAGGTGGTCGTTCACTCCTCTGGAACCTCACCCACACAACACCTTGTTCATGGAGCGGTGTCTTCTGTAAGGGAAACCGGGTCACAATGTTGCGGTTTCCAGGTGTGGGTTTCTCTGGGACCCTTCCTTTGGGTTTAGGGAACCTTACTCAGTTGAAAACCCTCTCTCTCCGGTTCAACGCACTAAATGGGACAATCCCCTCGGATTTCGCCAACCTTGTTAACTTGAGGAACCTTTATCTTCATGATAACTTCTTCTCCGGTGAAATTCCTGATTTTGTGTTCAATTTGAAGAATTTGATGACGTTGAATTTGGGCAGTAACAATTTCAGTGGTGAGATATCACCAAAGTTCAATAACCTCACTCGTTTGAGTATGCTCTTTTTGGAGAATAATCATTTCATTGGGTCAATTCCTGACATTAATGTTCCACCTCTTCAGCACTTCAATGTTTCAAATAATCTCTTAAATGGGTCTATTCCTGAGAGGTTTTCACGTTTGGATAAAAGTGCTTTTTCTAGGAATTCACTTTGTGGAAAGCCCTTGCAACCTTGCCCTGGAACTGAGGGTGGAAAAAAGAAATTATCTGGTGGCGCAATTGCGGGAATTGTGATTGGTTCTTTGTTTGGTGTGTTGTTGGTTCTGCTGATTTTGTTGTTATTATGTAGAAAAAAGAGAGGTATAAGTGATTCCAATGATGTTGCGCCTACCAAGCCGGTTGAAGTTGTGGCGCCGCTAGAGAAGAGTGGTAATGATAGTGAGAATGATGCTAGTGATAGTAACTTAGCTGTTGCAGCAACAAAAGTTGATGGTAAGAGTTTGGTGTTTTATGGGAACATGAGTAAACCCTTTGATCTAGAAGAATTGCTGAGGGCTTCAGCTGAAATGTTAGGGAAGGGGACTTTTGGAACCACTTATAAGGCTACTGTAGATACAGGGATGAATGTGGTGGTGAAGAGGTTGAGAGATGTTACTGCACCAGAAAATGAATTCAAAGAGAAAATTGAGCAAGTGGGTAAGATGGCTCATGAGAACTTGGTCCCACTCAAGGGTTATTATTTTAGCTGGGATGAAAAGCTTTTTGTGTATGATTACATGCCAATGGGAAGCTTATTTACCCTCTTACATGCAAATAGTGGAGCTGGCAGGATTCCCCTGAATTGGGAAACAAGGTCTGCCATTGCCCTTGGTGCAGCTCGTGGGATTGCATACCTACATTCACATGGCCCGGCATTCGCCCATGGAAATATCAAGTCATCAAATATACTTCTCACCGAATCTTGCGAAGCTCATGTCTCCGACTTCGGCCTTGCTTATCTTGCACTCCCAACCTCTACACCTAACCATGTTGAGGAGGAAATGCTGAAGGTCTTGCAGCTTGCACTTGAATGTACTGCTCAATATCCTGACAAGAGACCTTCCATGGATGTGGTGGCAAGAAGGATTGAGGAAATTTGTAATTCCAGCATTGAAAAAGAGGGAGTTTCCCAACAGTACTATTCTGTAGACTTGGATGCACTGCAAGCTTGA 1629 0.4371 MNSFLSLLFFLFAIAAGEDIASDRVALLALRSAVGGRSLLWNLTHTTPCSWSGVFCKGNRVTMLRFPGVGFSGTLPLGLGNLTQLKTLSLRFNALNGTIPSDFANLVNLRNLYLHDNFFSGEIPDFVFNLKNLMTLNLGSNNFSGEISPKFNNLTRLSMLFLENNHFIGSIPDINVPPLQHFNVSNNLLNGSIPERFSRLDKSAFSRNSLCGKPLQPCPGTEGGKKKLSGGAIAGIVIGSLFGVLLVLLILLLLCRKKRGISDSNDVAPTKPVEVVAPLEKSGNDSENDASDSNLAVAATKVDGKSLVFYGNMSKPFDLEELLRASAEMLGKGTFGTTYKATVDTGMNVVVKRLRDVTAPENEFKEKIEQVGKMAHENLVPLKGYYFSWDEKLFVYDYMPMGSLFTLLHANSGAGRIPLNWETRSAIALGAARGIAYLHSHGPAFAHGNIKSSNILLTESCEAHVSDFGLAYLALPTSTPNHVEEEMLKVLQLALECTAQYPDKRPSMDVVARRIEEICNSSIEKEGVSQQYYSVDLDALQA* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0310 542 Gene3D Ribonuclease Inhibitor 20 175 IPR032675 -
Lan11g0310 542 ProSiteProfiles Protein kinase domain profile. 324 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0310 542 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Lan11g0310 542 SUPERFAMILY Protein kinase-like (PK-like) 328 513 IPR011009 -
Lan11g0310 542 PANTHER OS05G0588300 PROTEIN 8 483 - -
Lan11g0310 542 PANTHER OS05G0588300 PROTEIN 482 519 - -
Lan11g0310 542 Gene3D Ribonuclease Inhibitor 179 218 IPR032675 -
Lan11g0310 542 Pfam Protein tyrosine and serine/threonine kinase 328 500 IPR001245 GO:0004672|GO:0006468
Lan11g0310 542 Gene3D Transferase(Phosphotransferase) domain 1 399 485 - -
Lan11g0310 542 SUPERFAMILY L domain-like 40 202 - -
Lan11g0310 542 Gene3D Phosphorylase Kinase; domain 1 291 398 - -
Lan11g0310 542 PANTHER LRR RECEPTOR-LIKE KINASE 482 519 - -
Lan11g0310 542 PANTHER LRR RECEPTOR-LIKE KINASE 8 483 - -
Lan11g0310 542 Pfam Leucine rich repeat N-terminal domain 21 56 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0310 Lan-Chr11 2017201 2020052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0310 484 518 Receptor kinase-like Gene Family AT1G48480 51.429 5.54e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lan11g0310 PK_Tyr_Ser-Thr 4.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0310 - - aprc:113846223 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1080 2 22047667 22050729 Lan11g0310 11 2017201 2020052 LSH
Lan11g0310 11 2017201 2020052 Lan9g1278 9 19991901 19995212 LSH