Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0309 ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGTCCATGGACTGCAGATGAGGACAAGAAGCTCATCAACTTCATTCTTACCAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAGCTAGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGACTCAGGTGGATAAATTATCTGAGGCCAGACTTAAAGAGAGGGCTACTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTAAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTACCTGGAAGAACTGATAATGAGATCAAAAACCATTGGAATACACATATAAAGAAAAAGCTCAAGAAAATTGGCATTGATCCTGTCACTCACAAACCACTCTCTAATAGTGCAACTGATCAAACTAAACAACAACTAAACCAGCCACTAGAAGAACCATTCCAAGTTGACTTTGACCCCATATTTGAACCTGAAATTGAACAAAATAAGGAGCCAGAGATACAAGAGACTTCAATTGATTCATCAACCATCACTAAAGCTAAAGAAGAAGACAACATTATAACACCACTATTTGACACAATGGATGATGTAATGAATGGGTTTTGCACTGATGAAGTTCCAATAATTGAACCTCATGAGATTCTAGTTCCATGTATTCCTTCCTCTTCATCAAACTCCATATCATCTTCTTCAAATTCAACCAATTTCCTTGAAGACCTTCAGCTTCCAGATTTTGAGTGGTCTTGTAATTACAATAATAGTGATGCCAATGATAACAAAAATATGGATTTATGGGATGATGATGATTTTATTAGCAGTTTGAATATGCTGATTAATGATGTTGGTGATGATGAAAAACAAGTGTTCGATGCAACCGATGGTTCTCATTGTCAGTACCAGAAAACGGTCATGGAATCAGAATCTTGGGCATTTGGGTTGTTTTGA 951 0.3796 MGRQPCCDKVGLKKGPWTADEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGLLSEYEEKMVIDLHAKLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKIGIDPVTHKPLSNSATDQTKQQLNQPLEEPFQVDFDPIFEPEIEQNKEPEIQETSIDSSTITKAKEEDNIITPLFDTMDDVMNGFCTDEVPIIEPHEILVPCIPSSSSNSISSSSNSTNFLEDLQLPDFEWSCNYNNSDANDNKNMDLWDDDDFISSLNMLINDVGDDEKQVFDATDGSHCQYQKTVMESESWAFGLF* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0309 316 CDD SANT 16 61 IPR001005 -
Lan11g0309 316 SMART sant 66 114 IPR001005 -
Lan11g0309 316 SMART sant 13 63 IPR001005 -
Lan11g0309 316 CDD SANT 74 111 IPR001005 -
Lan11g0309 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan11g0309 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan11g0309 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan11g0309 316 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lan11g0309 316 PANTHER MYB TRANSCRIPTION FACTOR 1 271 - -
Lan11g0309 316 Gene3D - 11 67 - -
Lan11g0309 316 Gene3D - 70 145 - -
Lan11g0309 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan11g0309 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan11g0309 316 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 271 - -
Lan11g0309 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0309 Lan-Chr11 2003492 2005568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0309 1 282 MYB Transcription Factor Family AT1G66230 56.081 1.09e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan11g0309 Myb_DNA-binding 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0309 K09422 - gmx:100792103 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0309 11 2003492 2005568 Lan9g1281 9 20014021 20025099 LSH
Lan11g0309 11 2003492 2005568 Lan4g0202 4 3368971 3371992 PCT
Lan11g0309 11 2003492 2005568 Lan16g0615 16 7621792 7624409 PCT