Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0305 ATGGCCACTGAAGAGGTTAATAAACCTCTATCACTTCCTCCTTACCCTGAGATGATAATGAAAGCAGTAGAAGCACTGAATGATCCAAATGGATCTAACAAATCAGCCATAGCAAGTTACATAGAATCAACCTATGGTGAGATTCCAGCAGGACACACACCACTTCTCACTCATCACCTCCACAAGATGAAAGAGAGTGGTGAGCTTGTGTTCTTGAAGAACAACTACATGAAACCTGACCCTAATGCCCCACCAAAGAGAGGTCGTGGTAGGCCACCAAAACCAAAGGCTGCTATGCCTCCTGGCACTACTGTGTCCTCACCAAGGCCAAGGGGTCGTCCTCCTAAGGACCCTAATGCTCCACCAAGTGCTAAGGTGGTACCAAGTGGAAGTGGTAGGCCAAGAGGAAGGCCTAAGAAGATTGCTCGAACTGTGCCGCCGCCACCACCCGTGGCGGCTGCACCTGTTAGTAGTGGAAGGCCAAGGGGTAGGCCTCCTAAGGTGAAGCCTCAATTGACAGAAGTTAGTGTTGAATCATAG 540 0.4944 MATEEVNKPLSLPPYPEMIMKAVEALNDPNGSNKSAIASYIESTYGEIPAGHTPLLTHHLHKMKESGELVFLKNNYMKPDPNAPPKRGRGRPPKPKAAMPPGTTVSSPRPRGRPPKDPNAPPSAKVVPSGSGRPRGRPKKIARTVPPPPPVAAAPVSSGRPRGRPPKVKPQLTEVSVES* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0305 179 PANTHER HMG-Y-RELATED PROTEIN A 1 175 IPR031059 GO:0003677|GO:0005634
Lan11g0305 179 MobiDBLite consensus disorder prediction 141 155 - -
Lan11g0305 179 PANTHER HISTONE H1 1 175 - -
Lan11g0305 179 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Lan11g0305 179 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Lan11g0305 179 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Lan11g0305 179 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Lan11g0305 179 Pfam linker histone H1 and H5 family 13 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan11g0305 179 Gene3D - 8 91 IPR036388 -
Lan11g0305 179 Pfam AT hook motif 159 170 IPR017956 GO:0003677
Lan11g0305 179 Pfam AT hook motif 132 142 IPR017956 GO:0003677
Lan11g0305 179 Pfam AT hook motif 86 94 IPR017956 GO:0003677
Lan11g0305 179 Pfam AT hook motif 108 119 IPR017956 GO:0003677
Lan11g0305 179 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lan11g0305 179 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Lan11g0305 179 SMART AT_hook_2 159 171 IPR017956 GO:0003677
Lan11g0305 179 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Lan11g0305 179 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan11g0305 179 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan11g0305 179 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lan11g0305 179 PRINTS High mobility group protein (HMGY) signature 108 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lan11g0305 179 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lan11g0305 179 MobiDBLite consensus disorder prediction 107 122 - -
Lan11g0305 179 MobiDBLite consensus disorder prediction 71 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0305 Lan-Chr11 1971611 1972836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0305 18 80 Single Myb Histone (SMH) Gene Family AT1G49950 36.508 8.77e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0305 - - gmx:100793697 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0305 11 1971611 1972836 Lan9g1282 9 20025275 20026479 LSH
Lan4g0199 4 3321217 3323029 Lan11g0305 11 1971611 1972836 PCT