Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0288 ATGGCTATAGTCCACGTCATCACCATTGTTTCCTTCCTGGCTCTCCTAGCATCCACCCAAGCCAAAATCCCCGGTGTCTATTCCGGCGGCGCGTGGCAAACCGCACACGCCACTTTCTACGGAGGCAGCGACGCTTCTGGAACCATGGGAGGAGCATGTGGGTACGGGAATTTGTACAGCCAAGGATATGGAGTAAGCACTGCAGCATTAAGCACTGCTTTGTTCAACAATGGTCTAAGCTGTGGCGCGTGTTTTGAGATAAAGTGTGCTAATGATCCTAGTTGGTGCCATCCTGGTAGTCCTTCAATTTTAATCACTGCCACTAATTTCTGTCCTCCAAACTATGCTCTTCCAAGTGACAATGGTGGTTGGTGTAACCCTCCTAGGCCTCATTTTGATCTAGCCATGCCTATGTTTCTCAAGATTGCTCAGTACCGCGCCGGCATAGTTCCCGTCAATTACCGCCGAGTGCCATGCCAAAAACAGGGTGGGATAAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTTCTGATCACCAACGTGGGAGGTGCAGGGGATATCGTGAGGGTGAGTGTTAAAGGTTCAAAGAGTGGGTGGATGAGCATGAGTCGCAATTGGGGTCAGAATTGGCAATCAAACTCTGTTCTGGTTGGTCAGTCACTTTCATTTAGGGTCACAGCCAGTGACAGACGCACCTCCACTTCTTGGAACATTGCACCCTCTAATTGGCAATTTGGACAAACCTTCATTGGCAAGAATTTTAGGGTCTAG 777 0.4891 MAIVHVITIVSFLALLASTQAKIPGVYSGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVSTAALSTALFNNGLSCGACFEIKCANDPSWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVNYRRVPCQKQGGIRFTINGFRYFNLVLITNVGGAGDIVRVSVKGSKSGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRRTSTSWNIAPSNWQFGQTFIGKNFRV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0288 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Lan11g0288 258 Gene3D - 18 160 IPR036908 -
Lan11g0288 258 SUPERFAMILY Barwin-like endoglucanases 13 182 IPR036908 -
Lan11g0288 258 PANTHER EXPANSIN-A15 6 257 IPR002963 GO:0009664
Lan11g0288 258 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Lan11g0288 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Lan11g0288 258 Gene3D - 164 256 IPR036749 -
Lan11g0288 258 SMART dpbb_1 67 154 IPR007112 -
Lan11g0288 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Lan11g0288 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Lan11g0288 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lan11g0288 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lan11g0288 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lan11g0288 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Lan11g0288 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Lan11g0288 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Lan11g0288 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Lan11g0288 258 PANTHER EXPANSIN-A4 6 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0288 Lan-Chr11 1882847 1885129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0288 1 258 Expansin Gene Family AT2G39700 83.721 2.44e-165 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0288 - - gmx:100809018 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0288 11 1882847 1885129 Lan11g0288 11 1882847 1885129 ECH
Lan2g1096 2 22194716 22196655 Lan11g0288 11 1882847 1885129 LSH