Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0287 ATGCGTAGGAACAGTCCAGGATACTACAGTCCTCCAAGGAGAGGATACGGCGGTAGAGGGAGATCACCACCGCCACCATCACCTCCTTATAGGAGGGGACACGGCGGCGGAGGAGGCAGGCGTAGGGAAAGCAATAATGGAAGCCTTCTCGTAAGGAACATTCCTCTCGATTGTCGACCTGATGAACTTCGGGTCCCGTTCGAACGATTCGGTCCGGTTCGTGATGTCTATATTCCGAAGGACTATTACTCAGGACAACCCCGAGGATTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCGGAGGCACAGTACCATATGAATGGACAAATTTTTGCTGGAAGAGAAGTAACCGTAGTTGTAGCTGCAGAGACAAGAAAGAGACCAGAGGAGATGCGCCACAGGACTAGTAGGTTCAGAGGACCGGGGAGCTATGGGGGGCGAAGGTCTTCACCTTATGGGCGTTATCGATCTCGCTCAATTTCCAGATCTCGCTCACGCTCACCACCTTATCACTCTGGTTCCAGAAGTCGATATCATTCAAGGTCACATTCTCCTGCCCCGAGACGGCAAAATGACTACTCTGTTTCCCCTAGAAGGCCAGTGGAGCGTCCCAGGTCACCAAAAAGTCCTCTTGGGGAGCGAGATGGTGACCAAAAGCGCAGGTCATATTCTCCTGGGGAGCAAGATGGTGAACATAATCGCAGGTCTTATTCTCCAGCTTATGGTGCTGATCAGAATCCAAGTAATGGATATGCTGAGAACTCTATATACAAGTCTGAGGCTGATCGAGTACAGTGGAAATCACGTAGAGCATCAAGATCACCAGCTGGATCTAGATCAAGGTCTCCAATCGAGTTGTCACCCAGACATGATAGATGA 885 0.5028 MRRNSPGYYSPPRRGYGGRGRSPPPPSPPYRRGHGGGGGRRRESNNGSLLVRNIPLDCRPDELRVPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDPYDASEAQYHMNGQIFAGREVTVVVAAETRKRPEEMRHRTSRFRGPGSYGGRRSSPYGRYRSRSISRSRSRSPPYHSGSRSRYHSRSHSPAPRRQNDYSVSPRRPVERPRSPKSPLGERDGDQKRRSYSPGEQDGEHNRRSYSPAYGADQNPSNGYAENSIYKSEADRVQWKSRRASRSPAGSRSRSPIELSPRHDR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0287 294 MobiDBLite consensus disorder prediction 128 294 - -
Lan11g0287 294 PANTHER OS02G0252100 PROTEIN 23 284 - -
Lan11g0287 294 MobiDBLite consensus disorder prediction 241 257 - -
Lan11g0287 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Lan11g0287 294 MobiDBLite consensus disorder prediction 156 177 - -
Lan11g0287 294 SUPERFAMILY RNA-binding domain, RBD 43 152 IPR035979 GO:0003676
Lan11g0287 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Lan11g0287 294 MobiDBLite consensus disorder prediction 197 236 - -
Lan11g0287 294 MobiDBLite consensus disorder prediction 1 48 - -
Lan11g0287 294 Gene3D - 39 160 IPR012677 -
Lan11g0287 294 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 284 - -
Lan11g0287 294 SMART rrm1_1 48 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0287 Lan-Chr11 1872616 1894202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0287 51 141 Eukaryotic Initiation Factors Gene Family AT1G71770 38.144 1.68e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0287 K12900 - gmx:100804294 293.893