Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0275 ATGGAGGAATCTGAGTACTTGATGTGGATGAAGAGGAAACAGATCCTGAAGTCACATCTTGAAGCAGTTGGAGATGCCAGCATCAACAATTTCTACTACTCATCATGCGTAGAAAGGGCTTTTGCTGAAGATGCAGCTAGGGTACTTGGTGGGAGCATTTGGCCTCCAAGATCATACTCTTGTACTTTTTGTAAAAGAGAGTTCAGGTCTGCTCAAGCACTTGGAGGTCACATGAATGTTCACAGGAGGGACAGGGCTAGGCTCAAACAAAATCTTAGCCCTCATAATGGTCAAACCCAAACCCTTCTTGAAGTTGATCATCACAAAAATGATCGCAATAACTCATTAGGTAATCATTTTTCTTCGCAAATTTCAAGCTCCCACCAGCTTGATTGTTGTCTTAATCCTAATTCTAGCCTTGCTGCTACAATCACAACAACCAGAACCTCACCTTCTTATTCTTCATCAATTATAGGGTCTTCTTATTCAGAACATCAAGGGATAGTGGATGCAAGAGAAGACAAATTTAAAGGCTTTGGATGTGATAACTATGTTGAAACAAGTTTGTCTGTAGGTTGGAGTTCCATGTTTGGACAAAAGTCACCAATTATTCCATGTGAGGGGTCTCGGGGCAAAACCATCATCAATGGTAAACGACTAAAGACTAACATTTCTTCACTGCCTGTGATGTTACTCAAGCCATGTTCAAATGATAGAGGTCTTGCTTTCCTATCTGCAGAAGTCAAAATGGAGGATTTAGATCTTGAACTCAGGCTAGGGAAACAACATAAAGTTAAGTAG 801 0.407 MEESEYLMWMKRKQILKSHLEAVGDASINNFYYSSCVERAFAEDAARVLGGSIWPPRSYSCTFCKREFRSAQALGGHMNVHRRDRARLKQNLSPHNGQTQTLLEVDHHKNDRNNSLGNHFSSQISSSHQLDCCLNPNSSLAATITTTRTSPSYSSSIIGSSYSEHQGIVDAREDKFKGFGCDNYVETSLSVGWSSMFGQKSPIIPCEGSRGKTIINGKRLKTNISSLPVMLLKPCSNDRGLAFLSAEVKMEDLDLELRLGKQHKVK* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0275 266 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lan11g0275 266 Gene3D Classic Zinc Finger 56 117 - -
Lan11g0275 266 SMART c2h2final6 59 81 IPR013087 -
Lan11g0275 266 Pfam C2H2-type zinc finger 59 83 - -
Lan11g0275 266 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 265 - -
Lan11g0275 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Lan11g0275 266 SUPERFAMILY beta-beta-alpha zinc fingers 56 86 IPR036236 -
Lan11g0275 266 PANTHER OS07G0101800 PROTEIN 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0275 Lan-Chr11 1802548 1803468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0275 1 260 C2H2 Transcription Factor Family AT5G06070 36.162 8.91e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g0275 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0275 - - lang:109340014 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0275 11 1802548 1803468 Lan11g0275 11 1802548 1803468 ECH
Lan2g1106 2 22350897 22351935 Lan11g0275 11 1802548 1803468 LSH
Lan16g0651 16 8572694 8573861 Lan11g0275 11 1802548 1803468 PCT