Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0271 ATGAAGGCATTGATCCTGGTCGGAGGGTTTGGGACAAGGTTGAGGCCATTGACACTCAGTTTCCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCAATGATTCTTCATCAGATTGAGGCTCTTAAGGCCATTGGAGTTACTGAAGTCGTACTAGCTATTAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGATTTTGAAGAAAAGCTTGGCATCAAGATCACTTGTTCACAAGAAACTGAACCACTGGGAACTGCTGGGCCCCTGGCCCTTGCCAGGGATAAGCTGATAGATGAGTCTGGAGAGCCATTTTTTGTTCTCAACAGTGACGTCATCAGCGAGTACCCACTGAAAGAAATGATCGAGTTCCACAAATCCCATGGAGGAGAGGCTTCTATAATGGTGACAAAGGTTGATGAGCCATCGAAATATGGTGTGGTTGTGACGGAGGAAGCTACAGGGCAGGTTGAGAAATTTGTGGAAAAGCCGAAGCTGTTTGTTGGTAACAAAATCAATGCTGGAATCTACCTCTTGAACCCTTCTGTTTTGGATCGAATTGAACTGAGACCCACTTCTATTGAGAAAGAGGTTTTCCCAAAGATTGCAGCAGAGAAAAAGCTATATGCAATGGTTCTGCCTGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTACTGGCCTGAGACTCTACTTAGACTCATTAAAGAAAAGGTCATCTCCTAAGTTGGCCAGTGGCACTCACATTGTTGGGAATGTCATTGTGGATGAGACTGCCAAAATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCTATTGGACCTGGCTGTATTGTTGAAGCTGGAGTTAGGCTCTCGCGCTGCACAGTAATGCGAGGAGCCCGGATTAAAAAGCATGCTTGCATTTCCAGCAGTATTATTGGTTGGCATTCTACTGTTGGACAATGGGCTCGTGTAGAGAATATGACTATCCTTGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTGGTTTTGCCTCACAAGGAGATCAAGTCAAATATTCTGAAGCCTGAGATAGTCATGTGA 1086 0.4429 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKDFEEKLGIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVTEEATGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLKKRSSPKLASGTHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVEAGVRLSRCTVMRGARIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSNILKPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0271 361 Gene3D Hexapeptide repeat proteins 236 358 - -
Lan11g0271 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 233 IPR029044 -
Lan11g0271 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Lan11g0271 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Lan11g0271 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Lan11g0271 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Lan11g0271 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lan11g0271 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0271 Lan-Chr11 1769972 1773154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0271 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 22.280 6.36e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0271 K00966 - csin:114292478 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0271 11 1769972 1773154 Lan11g0271 11 1769972 1773154 ECH
Lan2g1109 2 22385896 22389174 Lan11g0271 11 1769972 1773154 LSH
Lan11g0271 11 1769972 1773154 Lan9g1305 9 20332375 20335339 LSH
Lan4g0173 4 2829235 2833591 Lan11g0271 11 1769972 1773154 PCT
Lan16g0664 16 8753846 8758581 Lan11g0271 11 1769972 1773154 PCT
Lan11g0271 11 1769972 1773154 Lan4g0173 4 2829235 2833591 PCT
Lan11g0271 11 1769972 1773154 Lan16g0664 16 8753846 8758581 PCT