Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0240 ATGCGCTGTGGTTCAAAAAACACACTTTCTACCTCAAATCAAGTCATGGAAAGTGAGTTTCAGAAGATTTTGCTTGAATTGTCTGCGTCTGATGATGTTGAAGCTTTCAAAAGAGAAGTGGAAGAGAAAGGATTGGAGGTTAACGAGGCTGGATTTTGGTACGGTAGAAGAATTGGATCGAAGAAGATGGGGTATGAAAAGAGGACCCCTGTCATGATTGCTTCTTTGTTTGGAAGCACTAACGTGGTTAAGTATATTATTGAATTTGGTATGGTTGATGTGAACAAGGTGTGTGGTTCTGATAGGGTCACTGCCCTCCATTGCGCTGTTGCTGGGGGTTCTGAATCCTCACTCGAGATTGTCAAGCTCTTGCTTGATGCTGGGGCAGATGCTGATTGCCTTGATGCTATTGGCAACAAGCCTGTTAATCTGGTTGCTCCTGGCTTTAATCCTTCGTCCAATTCACGAAGGAAGGCTTTGGATTTGTCTCTCAGAGGCGGGAAAGGCGATCAACTCTTGTACGAGACGGAGGAGATGCCTTCTGAGAAAAAAGAAGGGGCTGATAAGAAAGAATATCCCGTTGATATATCGTTGCCTGACATAAACAACTGTGTATATGGAACGGACGAGTTTAGGATGTATAGCTTCAAGGTGAAGCCATGCTCGAGGGCTTACTCCCATGACTGGACCGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACGGAAATACCCTTACAGTTGTGTTCCCTGCCCTGAGTTTCGCAAGGGGGCCTGCCAAAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTACATCCTGCACAATACCGGACAAGGCTTTGCAAGGATGAGACTGGCTGCAATAGAAAGGTCTGCTTTTTTGCTCACAAACCTGAAGAGTTGCGCCCTGTGTATGCTTCCACTGGTTCAGCGATGCCTTCACCAAAATCCTATTCAGCTAGTGCACCTGACATGACACTAATGAGTCCATTGTGTCTCAGTTCGTCATTGCCCATGTCAACTGTTTCAACACCACCAATGTCAACTTTGGCAGCTTCATCTCCCAAGAGTGGAAACATGTGGCAGAACCAAACCAACCTTAATCTATCATCATTGCAGCTTCCGAGTAGCCAGCTGAAGGCTGCTTTGAGTGCCAGGGATCTCGATTTCGAGATGGAACTGCTCGGCCTAGGAAGTCCTAGCCACGCTTGTCAACAGCAGCAGCAGCAGCAATTGATTGAAGAGATTGCTAGAATTTCTTCCCCATCCTTCCGAAGACGGATGGGTGATTTGCATCCAACTAACCTTGATGAGCTGTTAGCATCTGCTGATGCTTCTACATTATCTCAGCTACATGGACTTTCTGTACAACCTTCAACATCCACACAGATGCAAACTCTAAACACCCTTCAGACGCGCCAAAACATGAACCACCTTCGCGCAAGTTATCCATCCAACAACATGCCTTCCTCTCCTGTGTATAAATCCTCACCATACGGGTTTGACTCATCGGCTGCTGTCGCAGCAGCAACAATGAATTCTAGGTCTGCTGCCTTCGCGAGGCGAAGCCAGAGTTTCATTGATCGTGGTGCTGCAGCAAACCATCTTGGGCTGTCTTCACCCTCCAGCCCCTCCTGTAGGCAGTCCTCTGCCCTTTCAGATTGGGGTTCCCCGACTGGGAAGCTGGACTGGGGTGTAAACGAAGATGAATTGAGCAAGCTGAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTATCATCCCCTATGGCACAATCAGAACTTGTTGAGCCAGATGTGCCATGGGTTCATTCATTGGTTAGAGATAGGTCGGAGAGATTTGGTGCTGAGAAGAAGCAGCAGCAGCAGCAGCAATATGATCTCAGTAAAGAGATGCTTCCACCATGGGTAGAGCAGCTGTACATAGAACAGCAGGAACAAATGGTAGCATGA 1986 0.4748 MRCGSKNTLSTSNQVMESEFQKILLELSASDDVEAFKREVEEKGLEVNEAGFWYGRRIGSKKMGYEKRTPVMIASLFGSTNVVKYIIEFGMVDVNKVCGSDRVTALHCAVAGGSESSLEIVKLLLDAGADADCLDAIGNKPVNLVAPGFNPSSNSRRKALDLSLRGGKGDQLLYETEEMPSEKKEGADKKEYPVDISLPDINNCVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAPDMTLMSPLCLSSSLPMSTVSTPPMSTLAASSPKSGNMWQNQTNLNLSSLQLPSSQLKAALSARDLDFEMELLGLGSPSHACQQQQQQQLIEEIARISSPSFRRRMGDLHPTNLDELLASADASTLSQLHGLSVQPSTSTQMQTLNTLQTRQNMNHLRASYPSNNMPSSPVYKSSPYGFDSSAAVAAATMNSRSAAFARRSQSFIDRGAAANHLGLSSPSSPSCRQSSALSDWGSPTGKLDWGVNEDELSKLRKSASFGFRNNGVSSPMAQSELVEPDVPWVHSLVRDRSERFGAEKKQQQQQQYDLSKEMLPPWVEQLYIEQQEQMVA* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0240 661 Gene3D - 16 158 IPR036770 -
Lan11g0240 661 MobiDBLite consensus disorder prediction 547 566 - -
Lan11g0240 661 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 275 IPR000571 GO:0046872
Lan11g0240 661 ProSiteProfiles Zinc finger C3H1-type profile. 250 277 IPR000571 GO:0046872
Lan11g0240 661 SMART ANK_2a 66 96 IPR002110 GO:0005515
Lan11g0240 661 SMART ANK_2a 101 133 IPR002110 GO:0005515
Lan11g0240 661 MobiDBLite consensus disorder prediction 547 569 - -
Lan11g0240 661 Gene3D - 251 313 - -
Lan11g0240 661 Pfam Ankyrin repeats (3 copies) 64 132 IPR002110 GO:0005515
Lan11g0240 661 PANTHER UNKEMPT FAMILY MEMBER 18 659 IPR045234 -
Lan11g0240 661 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 18 659 - -
Lan11g0240 661 SMART c3hfinal6 285 308 IPR000571 GO:0046872
Lan11g0240 661 SMART c3hfinal6 250 276 IPR000571 GO:0046872
Lan11g0240 661 ProSiteProfiles Ankyrin repeat profile. 101 136 IPR002110 GO:0005515
Lan11g0240 661 SUPERFAMILY Ankyrin repeat 24 155 IPR036770 -
Lan11g0240 661 ProSiteProfiles Ankyrin repeat region circular profile. 101 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0240 Lan-Chr11 1529035 1531715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0240 24 655 C2H2 Transcription Factor Family AT5G12850 38.604 1.86e-138 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan11g0240 Ank_2 6.2e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0240 - - gmx:100783376 926.391