Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0239 ATGCATGAAGCTAGTACATCAAACCAGTGGAAATACCCTTACAGTTGTGTTCCCTGCCCTGAGTTTCGCAAGGGGGCCTGCCAAAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTACATCCTGCACAATACCGGACAAGGCTTTGCAAGGATGAGACTGGCTGCAATAGAAAGGTCTGCTTTTTTGCTCACAAACCTGAAGAGTTGCGCCCTGTGTATGCTTCCACTGGTTCAGCGATGCCTTCACCAAAATCCTATTCAGCTAGTGCACCTGACATGACACTAATGAGTCCATTGTGTCTCAGTTCGTCATTGCCCATGTCAACTGTTTCAACACCACCAATGTCAACTTTGGCAGCTTCATCTCCCAAGAGTGGAAACATGTGGCAGAACCAAACCAACCTTAATCTATCATCATTGCAGCTTCCGAGTAGCCAGCTGAAGGCTGCTTTGAGTGCCAGGGATCTCGATTTCGAGATGGAACTGCTCGGCCTAGGAAGTCCTAGCCACGCTTGTCAACAGCAGCAGCAGCAGCAATTGATTGAAGAGATTGCTAGAATTTCTTCCCCATCCTTCCGAAGACGGATGGGTGATTTGCATCCAACTAACCTTGATGAGCTGTTAGCATCTGCTGATGCTTCTACATTATCTCAGCTACATGGACTTTCTGTACAACCTTCAACATCCACACAGATGCAAACTCTAAACACCCTTCAGACGCGCCAAAACATGAACCACCTTCGCGCAAGTTATCCATCCAACAACATGCCTTCCTCTCCTGTGTATAAATCCTCACCATACGGGTTTGACTCATCGGCTGCTGTCGCAGCAGCAACAATGAATTCTAGGTCTGCTGCCTTCGCGAGGCGAAGCCAGAGTTTCATTGATCGTGGTGCTGCAGCAAACCATCTTGGGCTGTCTTCACCCTCCAGCCCCTCCTGTAGGCAGTCCTCTGCCCTTTCAGATTGGGGTTCCCCGACTGGGAAGCTGGACTGGGGTGTAAACGAAGATGAATTGAGCAAGCTGAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTATCATCCCCTATGGCACAATCAGAACTTGTTGAGCCAGATGTGCCATGGGTTCATTCATTGGTTAGAGATAGGTCGGAGAGATTTGGTGCTGAGAAGAAGCAGCAGCAGCAGCAGCAATATGATCTCAGTAAAGAGATGCTTCCACCATGGGTAGAGCAGCTGTACATAGAACAGCAGGAACAAATGGTAGCATGA 1275 0.4855 MHEASTSNQWKYPYSCVPCPEFRKGACQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAPDMTLMSPLCLSSSLPMSTVSTPPMSTLAASSPKSGNMWQNQTNLNLSSLQLPSSQLKAALSARDLDFEMELLGLGSPSHACQQQQQQQLIEEIARISSPSFRRRMGDLHPTNLDELLASADASTLSQLHGLSVQPSTSTQMQTLNTLQTRQNMNHLRASYPSNNMPSSPVYKSSPYGFDSSAAVAAATMNSRSAAFARRSQSFIDRGAAANHLGLSSPSSPSCRQSSALSDWGSPTGKLDWGVNEDELSKLRKSASFGFRNNGVSSPMAQSELVEPDVPWVHSLVRDRSERFGAEKKQQQQQQYDLSKEMLPPWVEQLYIEQQEQMVA* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0239 424 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 11 422 - -
Lan11g0239 424 MobiDBLite consensus disorder prediction 310 329 - -
Lan11g0239 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 18 38 IPR000571 GO:0046872
Lan11g0239 424 SMART c3hfinal6 48 71 IPR000571 GO:0046872
Lan11g0239 424 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Lan11g0239 424 Gene3D - 15 76 - -
Lan11g0239 424 MobiDBLite consensus disorder prediction 310 332 - -
Lan11g0239 424 ProSiteProfiles Zinc finger C3H1-type profile. 13 40 IPR000571 GO:0046872
Lan11g0239 424 PANTHER UNKEMPT FAMILY MEMBER 11 422 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0239 Lan-Chr11 1526589 1528360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0239 11 418 C2H2 Transcription Factor Family AT5G12850 36.080 7.70e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan11g0239 zf-CCCH 2.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0239 - - lang:109359623 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1145 2 22703140 22706099 Lan11g0239 11 1526589 1528360 LSH
Lan11g0239 11 1526589 1528360 Lan9g1339 9 20576811 20579651 LSH