Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0237 ATGATGAACTCCACGTCCAAATTCAACAGCGAAGATAGCGTGAAAGGTTCATGGAGTCCACAAGAGGATGCGAGGCTGTTGAAGCTGGTTGCGAGACACGGCCCCGGAAACTGGTCGGCGATCAGTTCCAGTATTCCAGGGCGTTCCGGCAAGTCGTGCCGTCTCCGGTGGTGTAATCAGCTGAGTCCCGACGTGAAGCACCGTCCATTTACCCCTGCGGAGGACAGTATCATCATCGATGCCCACGCGCTTCATGGTAACAGGTGGGCCACGATTTCAAGACTCTTACCAGGACGCACTGATAATGCTATAAAGAATCATTGGAACTCCACCCTCCGCCGCCGTCGTTTGGCTCAGGGAACCTCTTCCTCGGATTCCGACGCGGCGGTTATAAAGAAGCGCACCACCAATGACTTCCTCCTCCGTTCCAACATAGGTTTATTGGATCATAATTATCCATTCAAGAGGCCTTGCAGGGAAAGATGCTCCTATGAGAATAAAGATTCGGGTTCAGGTTCAGGTTTAGGTTCAGAGAAGATAACACTGGAGAATAATAATAATTCTCATGTGATAACGTCATTGAGCCTATTGCCACCGGGTACGGCGGAGGAAGAGGAAGAAGAAGAAGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAAGTTGAAGGAAGAGAAGGGAATGATGAAATGGTGAATGAGCAAAGCAGAATGATGGAGATGTTGCGGCGCATGATAGCTGATGAGGTTAGAAACTACGTGGATAGCTTGGGCCTTCATCAACCACTTCCTAAGTAA 795 0.4956 MMNSTSKFNSEDSVKGSWSPQEDARLLKLVARHGPGNWSAISSSIPGRSGKSCRLRWCNQLSPDVKHRPFTPAEDSIIIDAHALHGNRWATISRLLPGRTDNAIKNHWNSTLRRRRLAQGTSSSDSDAAVIKKRTTNDFLLRSNIGLLDHNYPFKRPCRERCSYENKDSGSGSGLGSEKITLENNNNSHVITSLSLLPPGTAEEEEEEEEEEEEEEEEEEVEGREGNDEMVNEQSRMMEMLRRMIADEVRNYVDSLGLHQPLPK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0237 264 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Lan11g0237 264 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan11g0237 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan11g0237 264 CDD SANT 69 112 IPR001005 -
Lan11g0237 264 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Lan11g0237 264 PANTHER MYB PROTEIN-RELATED 7 220 - -
Lan11g0237 264 MobiDBLite consensus disorder prediction 167 195 - -
Lan11g0237 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Lan11g0237 264 MobiDBLite consensus disorder prediction 201 226 - -
Lan11g0237 264 MobiDBLite consensus disorder prediction 163 236 - -
Lan11g0237 264 Gene3D - 69 115 - -
Lan11g0237 264 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Lan11g0237 264 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 7 220 - -
Lan11g0237 264 CDD SANT 17 59 IPR001005 -
Lan11g0237 264 Gene3D - 14 66 - -
Lan11g0237 264 SMART sant 14 63 IPR001005 -
Lan11g0237 264 SMART sant 66 114 IPR001005 -
Lan11g0237 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan11g0237 264 Coils Coil 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0237 Lan-Chr11 1507297 1508347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0237 12 115 MYB Transcription Factor Family AT3G50060 70.192 6.09e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan11g0237 Myb_DNA-binding 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0237 - - gmx:102661292 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0237 11 1507297 1508347 Lan11g0237 11 1507297 1508347 ECH
Lan11g0237 11 1507297 1508347 Lan9g1343 9 20587624 20588861 LSH