Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0236 ATGGAACCTCATCACCCACCCCAAGAAACCAAACCCACCGCCACCACCGTTGCTATCACCACTCCTTGTGAAACAACTAACACTGCCAACAGTAACAGTTCTAGCAGCAAGACCACCACCGCTAATAATACTAGCACTAACCGAAAATGCAAAGGTAAAGGTGGCCCTGATAACAACAAATTTCGATACCGTGGTGTGAGGCAACGAAGTTGGGGTAAGTGGGTAGCTGAGATACGTGAGCCACGTAAGCGTTCCCGGAAGTGGCTTGGCACCTTCACCACCGCCGAAGATGCCGCCAGAGCCTATGACCGTGCCGCCATTGTTCTCTATGGTTCTAGGGCACAGCTCAACCTTCAACCTTCTTCCACGTCTTCTCAATCTTCCTCTTCTCGTGGCTCTTCTTCTTCCACTCAAACCCTAAGGCCTTTACTTCCTCGCCCTTCAGGGTTTGGTTTCACCTCTTCGGCTTCTCACGTTCCTATGGTGTTCAACGGTGCTGTTACATCGGGTTTCGTGCCTTTTGGGGTTCACCCCTGCGGTGGCGGTAATAATAACAATAATATTGTGCCACAGGTGTTGTGCCCTATTGATAATAATGTGGTGCAACATCGTCAAAATCACTATCATCAACCTCAGCAATCAGAGCAACAATTACAACACCAACAAAAATATCACTACCCCGAATCTGATGTGGGTGTAGCTGGTTCCATCAATTCTACCTCATACCAAAATCATAGTCTTAATCATCAATTTGTTCCACATATTCCTGTGTCAAACCATATGCAGAATCAAAACTTCGTGGTTGAGGAAATGAATTCTTTGGTGGGTTCAAGTTTGTCTTCCCAGATTACTTTAGATCATGCAACTCCGGGTCAGGATCCAGATCCGTCGTTGGGGGTTGTTGGTGCAGTTGGTCTCGGTTCTCCTTCGATGTGGTCATTTACAAATGAGGATGGGTACCAGTACCCAGCTAGCTTATGGGATTATAATGATCCTTTATTTTTTGATTTTTGA 1014 0.4635 MEPHHPPQETKPTATTVAITTPCETTNTANSNSSSSKTTTANNTSTNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRSRKWLGTFTTAEDAARAYDRAAIVLYGSRAQLNLQPSSTSSQSSSSRGSSSSTQTLRPLLPRPSGFGFTSSASHVPMVFNGAVTSGFVPFGVHPCGGGNNNNNIVPQVLCPIDNNVVQHRQNHYHQPQQSEQQLQHQQKYHYPESDVGVAGSINSTSYQNHSLNHQFVPHIPVSNHMQNQNFVVEEMNSLVGSSLSSQITLDHATPGQDPDPSLGVVGAVGLGSPSMWSFTNEDGYQYPASLWDYNDPLFFDF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0236 337 MobiDBLite consensus disorder prediction 24 52 - -
Lan11g0236 337 MobiDBLite consensus disorder prediction 118 143 - -
Lan11g0236 337 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Lan11g0236 337 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Lan11g0236 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 3 335 - -
Lan11g0236 337 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 335 - -
Lan11g0236 337 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Lan11g0236 337 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Lan11g0236 337 MobiDBLite consensus disorder prediction 24 64 - -
Lan11g0236 337 CDD AP2 62 117 IPR001471 GO:0003700|GO:0006355
Lan11g0236 337 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Lan11g0236 337 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Lan11g0236 337 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Lan11g0236 337 MobiDBLite consensus disorder prediction 118 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0236 Lan-Chr11 1501033 1503019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0236 48 337 AP2-EREBP Transcription Factor Family AT2G40220 44.937 3.96e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan11g0236 AP2 4.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0236 K09286 - gmx:100301892 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0236 11 1501033 1503019 Lan11g0236 11 1501033 1503019 ECH