Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0234 ATGGACAATGTTCTTCTATCTGCAATGATGATCTCACCAGATTTGTTACCAACTGGTTCTTTGTTAGATTCTTTGATTCACATATCCAATGAAGTTGGATCAATGGATAAGTTTCCTTTTGTACACAGAAGGAATGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACAGGTACTTCACTTCCTCCTTCTTCAATTCTGTGTTTCACTGAGCTCTTCTCTGTGATTAGAAGAGTGAAGGTTTTGATCCAAGAGTGCAAAGATGGAAGCTCTCTTTGGGGTCTAATACAGTTAGAATTCATTTCCAACAAATTTAATGTGCTTGTGAAGGAGATGGGAAGAGCCCTTGATATTCTACCACTCAAGTTTCTTAATATAACAGCAGATATAAGGGAACAAGTGGAGCTTTTTCAAAAACAGACAAACAGAGCTGAGTTACTCATTGATCCAAGAGAGCTTCAAAGAAGAGAACAGCTTGTGCAAGTAATGTCCAACAACACTTTAGAAACCAAGAAGAACAAGGGCTTTTTCGACTTCGGGAAAGTGGAAGAGATATTAAGCAGCATTGGTTTCAGGATTCGATCAGATTATGATAGAGAAATATCCAAGTTAGAGGTTGAAGCTCAGAATCAAGCTGGCACAGGAGGAGTAACAGTTGTCTCCAATATATACAATCTCATAGCATTGGTTTCTTATTGCAAATCCATGATATTCAGAGATGGAGAAATTGAAAGAGATGAAGAAGTGAATAAGCCATCGCTGTCTGCATTTTTATATAACAATAGAATGTTACATGATAGTTCATCTTCTCATTCTATGTCTATTGTGCCTAATATTCCCGATGAATTTCGTTGCCCGATTTCACTTGATTTAATGAGGGCTCCGGTGATTGTATCGTCAGGTCACACTTATGATAGAATTTCAATTGCACAATGGATAAACTCAGGACACAACACTTGCCCAAAAAGTGGTCAAAGGCTAATTCACACTGCTTTAATACCAAACTACGCATTGAAGAGTCTTGTTCAGCAGTGGTGCTATGAGAACAATGTCCCAGTGAATGAGCCAGCAACTTCACTTTCTGCGGGAAACAAAAGCAGCAAGAAGAACTCAAAAGAGGTCGCTGTTGATCATGTTTCTGCAAACAAAGCAGCATCAGGTGCTGTCAAAATGACAGCAGAGTTTCTAGTTGGAAAATTGGCAACTGGTTCAGCTGATATACAAAGGCAAGCAGCATATGAACTTCGGTTGCTTGCCAAAACCGGCATGGATAACCGAAGAATCATAGCTGAGGTAGGGGCTATTCCATTTCTGGTAACACTATTAGGATCTCAGGATCCAAGAACCCAGGAATATGCAATCACAGCCTTGTTCAACCTCTCAATCTTTGACAACAACAAGGTTTTGATCATGGCAGCTGGAGCGGTTGATAAAATAGTACAAGTGCTAGAATCAGGGAAGACCATGGAGGCAAGAGAAAATGCGGCAGCAACAATATTTAGTTTGTCTATGGTAGATGATTTCAAATTACAAATTGGAGCGCGTCCGAGGGCAATACCTGCCTTAGTAGGACTACTTAGAGAAGGTACTACTATAGGGAAAAGAGATGCTGCTACTGCATTATTCAACCTTGCAATTTATAATCCTAACAAAGTAAGCATTGTTAATTCTGGTGCAATAACTATACTTGTAGAGTTGCTGATGGATGATAAGGCTGGAATAACAGATGATTCTTTAGCGGTGCTTTCTTTACTCTTAAGTTACTCTCGGGGACTTGATGAGATAAAGAATAGTAAATCATTGGTGCCACTTCTTATTGATCTTTTGAGATTTGGATCAGTTAAAGGGAAGGAAAATTCAATAACTCTTTTATTAGGATTGTGCAAAGAAGAAGGGGAACTAGTGGCGAGGCATCTCTTGGCGAATCCAAGGAGTATTCCTTCTCTTCAAAGCTTGGCTGCAGATGGTTCTTTGAGAGCTAGGAGAAAAGCTGATGCACTGCTTCGGTTACTCAATAGATGCTGCTCTCAACTTCATTCTGTTTGA 2073 0.3946 MDNVLLSAMMISPDLLPTGSLLDSLIHISNEVGSMDKFPFVHRRNVSSMIRRIKLLSSLFEEIQETGTSLPPSSILCFTELFSVIRRVKVLIQECKDGSSLWGLIQLEFISNKFNVLVKEMGRALDILPLKFLNITADIREQVELFQKQTNRAELLIDPRELQRREQLVQVMSNNTLETKKNKGFFDFGKVEEILSSIGFRIRSDYDREISKLEVEAQNQAGTGGVTVVSNIYNLIALVSYCKSMIFRDGEIERDEEVNKPSLSAFLYNNRMLHDSSSSHSMSIVPNIPDEFRCPISLDLMRAPVIVSSGHTYDRISIAQWINSGHNTCPKSGQRLIHTALIPNYALKSLVQQWCYENNVPVNEPATSLSAGNKSSKKNSKEVAVDHVSANKAASGAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMDNRRIIAEVGAIPFLVTLLGSQDPRTQEYAITALFNLSIFDNNKVLIMAAGAVDKIVQVLESGKTMEARENAAATIFSLSMVDDFKLQIGARPRAIPALVGLLREGTTIGKRDAATALFNLAIYNPNKVSIVNSGAITILVELLMDDKAGITDDSLAVLSLLLSYSRGLDEIKNSKSLVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVARHLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQLHSV* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0234 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Lan11g0234 690 SMART arm_5 556 596 IPR000225 GO:0005515
Lan11g0234 690 SMART arm_5 515 555 IPR000225 GO:0005515
Lan11g0234 690 SMART arm_5 431 471 IPR000225 GO:0005515
Lan11g0234 690 SMART arm_5 472 513 IPR000225 GO:0005515
Lan11g0234 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 526 568 IPR000225 GO:0005515
Lan11g0234 690 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Lan11g0234 690 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Lan11g0234 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 363 IPR013083 -
Lan11g0234 690 SUPERFAMILY ARM repeat 403 680 IPR016024 -
Lan11g0234 690 CDD RING-Ubox_PUB 292 334 IPR045210 -
Lan11g0234 690 SUPERFAMILY RING/U-box 276 362 - -
Lan11g0234 690 Gene3D - 520 680 IPR011989 -
Lan11g0234 690 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Lan11g0234 690 Pfam Armadillo/beta-catenin-like repeat 433 470 IPR000225 GO:0005515
Lan11g0234 690 Gene3D - 373 519 IPR011989 -
Lan11g0234 690 PANTHER U BOX DOMAIN-CONTAINING 18 688 - -
Lan11g0234 690 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 18 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0234 Lan-Chr11 1485405 1487888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0234 19 686 U-box Gene Family AT3G46510 36.866 2.83e-127 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0234 - - gmx:100793498 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0234 11 1485405 1487888 Lan11g0234 11 1485405 1487888 ECH