Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0229 ATGAGCAGAAAAAGGATTGTACATCAATCAAATCATCCATTCGCTTCTTACCCATTTGAAGCATATATCTCTGGTTCATGGCAATTTGTGGAGTTCATAACTATTGAATCTGGAACTTTATACATGCATTTAAAAAATAAGTACCCTGTGGCTATGGAGAAAGGCCCCTTTTCAGATATTCGCGTAAAGTCGAGGAAAGCTGTTTTATCAGATTGCTCAAGTTTTTTACGGCCTGGGATCGACGTATCTGTGCTGTTACCCCCCAAGAAGACTGATAATTCTGATGAATTAAATCTCAAGCCTATATGGCTTGATGCTAGGATAAGTTCTATACAGAGGAAGCCCCATAATTCCGAGTGCCAATGTCAGTTTTATGTGAACTTCTATGTCAATCAGGGTTCACTTGGTGCAGAGGTAAGAACTCTTAGAAAAGAGGTCAAGGTATTATCGATAAATGAAATCTCCATCCTCCAAAAGCTCGAGCATAGTCCATGTGAAAATGAGTACCGGTGGAATTCATCTGAGGACTGCCCTGCATTACCAAATACAAAATTACTTCTGGGGAAATTCTTAGCTGACATTTCATGGTTAGTGGTTACGTCTTTTGTGAAGAAAGTTTTGTTCTGCGTGCGAACTGTTAAAGACAAGCTTGTATATCAAATTTTGGATAGTGAAGCTGATGAGTCTTCATTGAACGCCGAGTCTACAATAAATGTTGTGAGTTTCACATTAGATGACGAGAATGGTGGGTTAGTATCCAATGTTTCACAAGTTACTGCTAAGCCCGAGACTATTGACTATGCGCATGAATCTCATGAAGAGAAAGTCTCTCCATCATCATATAATGTTGAGGGCTTACGGCGTTCCAAACGCAGACATGTTCAGCCTGAGCGTTACCTTGGCTACGGTGATGTTACTGAGTTTGATGTTGGTTCTTTTAGAAGCCAGCCACCAATCAAGATAGAAACAGCAGCTAAAGGTGATAACGGATTGTCATTGCCATTATCAAACCTGTTAACTTTGAATCAAAAGCCTCTACAAGAGGATTTTGACAATTCTCAAAATCTCAGCAGGATGAATATCAGCAGGGATCTTCTAGTGTACAGTACGAAGAAAAGGCATAAAACTAAGAAGCGAAAGTCAATTCGCAGCAACCAAAATGAACATCAAAATCAACTTGCTATTATTCCTCTTCCTGATCATGGAGAGCCAATAAGTGTTGACCTTTGTGATCAGAATGACAATGTTTCTGGAAATCATGGACATGAATCTTTTGATACTCCTTTAAAAAGTTATCATCATTATCTGGCAAGTAGCTCTAAACAAAAGTGCGAAAATATTAATCTGTTAACGTTTGAGCCAAATAGTATGCCTGCAAAAGCAAATGATGCAGAAAAGAGTGATGAGTTTACTTCAAGAAGTCATTTTGGTTACGGCATATCTAAGTTACAGAGGAAGGATTCATCTGTTATGGATGATATGGACCTCGGAGGAACTAAATGGGAAGGGATAAGTTCCAGCAAAGGAGTTCAAGATAAAACATACCATCCTACATATTCAAGAAGTAGAAATCCTGATGAAGAAAGAACATATAAGGACAGAACCTTGAATGCAACTGCCTACAAGGATTTGATAAATTCATACTTGAAGAACATCAATGTAACACCAACAGAAGAACTACCTGTCACTGACCATTGGAAGCAATTAGAGGAAACAAGTGGCTTTAGTGGAATGAAGGAAACAGAAACAGAAATATTCGATGAAGAGGATGCTGAAGAAGCTGAAATTGATATGTTGTGGCAAGAAATGGAAGTGTCATTGGCATCATGTTATCTTCAAGAGGCAGAGGGTGCAAATGCTGTCAATCACACTGAGACTGTGGAAAAATTGGAACAAGGTTGTCCACATGATGAAAGAATGGATGACCAAATCGGAATTCATTGCCGCATATGTGGTCATGTGTTTGTCGACATTACAAATATTTTCCCACCCTTTCTTGAACGGCCTGAGCGGCACCGTGAGGAGAAGCAGAGCAGTGGAGAAGATTCTGATTTAGAGCGAAAGGCTGATGAAGACGGCGATTGTCATCTCTTCTTGACCGATGCTCCTCCTGTTGATGAACCTAAAATTGTAGAAAATGAAAACGTCTGGACATTAATTCCTGAACTTAGCCCAAAGTTGCATGCACACCAAAAGAAAGCTTTTGAGTTCCTATGGCAAAATATTGCAGGGTCTATGGAGACAGCACTTATGGAAACAGATCCCAAAAAAATAGGTGGCTGTGTTATATCTCACACTCCTGGAGCTGGAAAAACTTTTCTCATTATTGCTTTTCTTGTCAGTTACTTAAAATTGTTCCCAGGGAAGAGGCCTCTGGTTCTGGCTCCTAAGACAACACTGTATACCTGGTATAAGGAATTCATAAAGTGGAAAATTCCAATACCGGTCTACTTGATTCACGGTCGAAGAACCTACAGGGTGTTCAATCAGAAAAACTCAATGGTTTTTCCTGGAATTCCCAAGCCTACTGAGGATGTGAAGCATGTTTTGGATTGCCTAGAGAAGATAAAAAATTGGCATTCACAACCCAGTGTTCTAATAATGGGTTATACATCCTTTTTGACATTGATGCGAGAGGATTCGAAGTATGCACATAGGAAGTATATGGCAAGAGTATTGAGGGAAAGTCCTGGCATGATGATACTGGATGAAGGACACAATCCTAGGAGCACTAAATCTAGGTTGAGAAAAGTTTTGATGAAAGTACACACAGATTTGAGGATATTACTTTCAGGTACATTGTTTCAAAACAATTTTTGTGAATACTTCAACACTCTCTGCTTGGCTAGACCAAAGTTTGCTAAGGAAGTGCTGAAAGCATTAGATCCAAAATACAAGAGGAAGAAAAAGAAAGGAGCTAATTATGAGTCACGTGCTAGAAAACTATTCTTAGATACAATTGCTAAGAAGATCGACTCGAAAGTTAATGAGGAGAGGATTGAAGGTCTAAACATGTTGAGAAATTTAACAAATGGTTTTATAGATGTTTATGAAGGTGGGAGTTCTGATGCTCTACCTGGTTTACAAATTTATACACTGCTGATGAATCCAACAGAAACACAGCATGAGATGCTGCATACACTGCACCAGAAAATGGCTCAGAGCAATGGGTACCCTCTGGAAATAGAGCTTTTAATAACTCTTGGATCTATACATCCTTGGTTGATCAAAACAGCTGTGTGTGCTGAGAAGTTTTTCAGTAATGAGCAATTGATAGACCTAGAGAAGTGTAAGTTTGATTTGAAAATAGGGTCAAAAGTGAAGTTTGTTTTAAGCCTTATCTATCGTGTTTTCCAGAATGAGAAGGTCCTTATCTTTTGCCACAACATTGCACCTGTGAAATTATTTCTTGAGTATTTTGAGAGGTACTTCAGATGGCAAAGAGGTAGGGAAGTTTTGGTACTGACTGGGGAACTCGAGCTCTTTGAACGCGGGAGAGTGATGGATAAGTTTGAGGAGCCTGGTGGAGTGTCAAAGATACTCCTTGCTTCAATTACAGCATGTGCCGAAGGCATTAGTTTAACCGCAGCTTCTCGGGTTATCATGTTGGATTCGGAGTGGAATCCATCAAAGACAAAGCAGGCTATTGCCCGAGCTTTTCGGCCTGGTCAGCAAAAGATGGTTTATGTATATCAGCTCTTGGTATCAGGTTCACTGGAAGAGGATAAGTACAAAAGAACAACTTGGAAAGAGTGGGTATCAAACATGATTTTCAGTGAAGATTTTGTGGAGGACCCCTCTCAGTGTCAAGCTAATAACCTTGAAGATGATATTCTGCGCGAAATGGTTGAAGAGGACAAGTCTAAATCATTCCATATGATATTGAAGAATGAAAAAGCTTCAACTACCAGAGAGAGGACCATCCAAAGTTAA 3933 0.3954 MSRKRIVHQSNHPFASYPFEAYISGSWQFVEFITIESGTLYMHLKNKYPVAMEKGPFSDIRVKSRKAVLSDCSSFLRPGIDVSVLLPPKKTDNSDELNLKPIWLDARISSIQRKPHNSECQCQFYVNFYVNQGSLGAEVRTLRKEVKVLSINEISILQKLEHSPCENEYRWNSSEDCPALPNTKLLLGKFLADISWLVVTSFVKKVLFCVRTVKDKLVYQILDSEADESSLNAESTINVVSFTLDDENGGLVSNVSQVTAKPETIDYAHESHEEKVSPSSYNVEGLRRSKRRHVQPERYLGYGDVTEFDVGSFRSQPPIKIETAAKGDNGLSLPLSNLLTLNQKPLQEDFDNSQNLSRMNISRDLLVYSTKKRHKTKKRKSIRSNQNEHQNQLAIIPLPDHGEPISVDLCDQNDNVSGNHGHESFDTPLKSYHHYLASSSKQKCENINLLTFEPNSMPAKANDAEKSDEFTSRSHFGYGISKLQRKDSSVMDDMDLGGTKWEGISSSKGVQDKTYHPTYSRSRNPDEERTYKDRTLNATAYKDLINSYLKNINVTPTEELPVTDHWKQLEETSGFSGMKETETEIFDEEDAEEAEIDMLWQEMEVSLASCYLQEAEGANAVNHTETVEKLEQGCPHDERMDDQIGIHCRICGHVFVDITNIFPPFLERPERHREEKQSSGEDSDLERKADEDGDCHLFLTDAPPVDEPKIVENENVWTLIPELSPKLHAHQKKAFEFLWQNIAGSMETALMETDPKKIGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRVFNQKNSMVFPGIPKPTEDVKHVLDCLEKIKNWHSQPSVLIMGYTSFLTLMREDSKYAHRKYMARVLRESPGMMILDEGHNPRSTKSRLRKVLMKVHTDLRILLSGTLFQNNFCEYFNTLCLARPKFAKEVLKALDPKYKRKKKKGANYESRARKLFLDTIAKKIDSKVNEERIEGLNMLRNLTNGFIDVYEGGSSDALPGLQIYTLLMNPTETQHEMLHTLHQKMAQSNGYPLEIELLITLGSIHPWLIKTAVCAEKFFSNEQLIDLEKCKFDLKIGSKVKFVLSLIYRVFQNEKVLIFCHNIAPVKLFLEYFERYFRWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVSGSLEEDKYKRTTWKEWVSNMIFSEDFVEDPSQCQANNLEDDILREMVEEDKSKSFHMILKNEKASTTRERTIQS* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0229 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 752 952 IPR014001 -
Lan11g0229 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1109 1275 IPR001650 -
Lan11g0229 1310 SMART helicmild6 1138 1223 IPR001650 -
Lan11g0229 1310 CDD DEXHc_ATRX-like 727 953 - -
Lan11g0229 1310 Pfam SNF2-related domain 730 989 IPR000330 GO:0005524|GO:0140658
Lan11g0229 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1302 IPR044567 GO:0080188
Lan11g0229 1310 Gene3D - 705 995 IPR038718 -
Lan11g0229 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1024 1264 IPR027417 -
Lan11g0229 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1302 - -
Lan11g0229 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 971 IPR027417 -
Lan11g0229 1310 MobiDBLite consensus disorder prediction 668 689 - -
Lan11g0229 1310 Pfam Helicase conserved C-terminal domain 1106 1222 IPR001650 -
Lan11g0229 1310 Gene3D - 1026 1310 IPR027417 -
Lan11g0229 1310 MobiDBLite consensus disorder prediction 501 530 - -
Lan11g0229 1310 MobiDBLite consensus disorder prediction 504 518 - -
Lan11g0229 1310 CDD SF2_C_SNF 1098 1234 - -
Lan11g0229 1310 SMART ultradead3 723 968 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0229 Lan-Chr11 1450170 1456196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0229 1102 1241 RAD5 or RAD16-like Gene Family AT5G43530 34.965 1.66e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan11g0229 SNF2_N 2.4e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0229 K10875 - gmx:100811703 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0229 11 1450170 1456196 Lan11g0229 11 1450170 1456196 ECH
Lan11g0229 11 1450170 1456196 Lan9g1350 9 20635384 20645928 LSH