Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0209 ATGCGGAAAAGAGAAAGGGAAAACCCTTGTGCGGTGTGCGGCCACTATCACAAGTACGAGGAAGGCGAAGTGTGTTCAATCTGCGGCCATAGGTTGATGGTTGGAGAGAAAACTTCGGTGCAAGTTAGCGCCTTCCCGTCGGTGATATTGCCGGAGTTTCTTTACCTCGGAAGCTATGACAACGCTTCACGCTCTGAGATTCTCAAGACTCAGGGAATCACTCGTATCCTCAATACTGTCCCTTGTCAAAATCTGTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGGCAAAACTTTGCCATTTGATGAAGGAATTCAGTTTTTAGAGCAATGCGAGAAGGATAAGGCTCGTGTGCTGGTTCATTGCATGTCAGGAAAGAATAGGTCTCCAGCTATTGTGATTGCATACATGATGAAGTCCAAAGGATGGAGACTTGAACAGTGCTATCAGTGGGTAAAGGAACGGAGACCGTCTGTTGAATTAACCGAAGGTGTTTACCAGCAACTGCAGGAGTTAGAGAACAAGATCTTCGGATCAAATGATGGTGGAAGCTCGGTGCTGCCCAGTTTCCCACCTGCAAGTTCAATTAGCTTTGGTTTCCCAAAGATCAATGATTCACCTCCATTTCCTGCCTTCAGCGGTGTTGAAACTACTTCAATTTTTGCCCGACCACCCCTAGCCATTGCTCCAACCGCTTTTACATTTGGAGCTGTTCAGCCACAGAATAGCGCGACTGGAAGCTCATATGGTGCAAATCCAGACGGTACCGATATCCAAATGGACGGTTCTTGA 798 0.4687 MRKRERENPCAVCGHYHKYEEGEVCSICGHRLMVGEKTSVQVSAFPSVILPEFLYLGSYDNASRSEILKTQGITRILNTVPCQNLYKNSFTYHCLPDGKTLPFDEGIQFLEQCEKDKARVLVHCMSGKNRSPAIVIAYMMKSKGWRLEQCYQWVKERRPSVELTEGVYQQLQELENKIFGSNDGGSSVLPSFPPASSISFGFPKINDSPPFPAFSGVETTSIFARPPLAIAPTAFTFGAVQPQNSATGSSYGANPDGTDIQMDGS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0209 265 ProSiteProfiles Dual specificity protein phosphatase domain profile. 45 180 IPR020422 GO:0006470|GO:0008138
Lan11g0209 265 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 265 - -
Lan11g0209 265 Pfam Dual specificity phosphatase, catalytic domain 54 176 IPR000340 GO:0008138|GO:0016311
Lan11g0209 265 SMART dsp_5 45 177 IPR020422 GO:0006470|GO:0008138
Lan11g0209 265 MobiDBLite consensus disorder prediction 245 265 - -
Lan11g0209 265 ProSitePatterns Tyrosine specific protein phosphatases active site. 122 132 IPR016130 GO:0016311|GO:0016791
Lan11g0209 265 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 182 IPR029021 -
Lan11g0209 265 Gene3D Protein tyrosine phosphatase superfamily 31 181 IPR029021 -
Lan11g0209 265 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 265 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Lan11g0209 265 CDD DSP_plant_IBR5-like 46 173 - -
Lan11g0209 265 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 101 169 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0209 Lan-Chr11 1340114 1344931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0209 1 164 Protein tyrosine phosphatase (PTP) family AT2G04550 72.781 5.89e-92 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0209 K04459 - gmx:100808721 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1173 2 22908638 22912414 Lan11g0209 11 1340114 1344931 LSH
Lan11g0209 11 1340114 1344931 Lan9g1363 9 20727057 20730936 LSH