Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0205 ATGCCAGAAAACATACACCCTCTCAGGAATTCTGCTTCTAATCACTCCGGTGATAACATTGAAGAAGCCATTCAGCGTTTGAAAATCAATGAAAATCGGGATAGAGATGGCGCAGCTCAATCTTCCCCATTCCCAGAACGACCTGGTGAACCTGACTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGCCGCTATAATCACCCGGCTAATGTTTCACCGGGTACTCATTATGGTGAAGAACTCCCGGAGAGAATTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGTTCAACATGTAAATATCATCATCCAAGGTATAGGCAAGGCGCTGCTCCTGTATCATTCAATTCTCTAGGTCTTCCTGTGCGTCAGGAAGAGAAACCATGTCCATATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTCGCATGCAAGTTTCATCATCCGCAGATTGGTGCTTCCCCCGTGGCTGGATCTCCGACCTCAACATTCCTTCCCACATCTGGCTTACCATATGTTGATGGGTTTTCTGCGTGGCAACTACCAAGAATGTCATATTTATATGGGCAGGGCATTCAATCTTATGTGCCACCTTTTCTGTCTTCTCCTCAAGGCATTATACCTGCACAAAACTGGAACACCTACATGGGAAGTATGAGCTCTGCAATGCCTACTTTTCTTGGATCTAATTTTCTTTATGACACAATGAATTTGGGAGAATCACTTCTTGGTGGTCAGGTAATAAATCCAACTCTCCCTGAGAGACCTGATCAACCAGAATGTAGATACTTCATGAGCACCGGTACCTGCAAATATGGCTCTGATTGCAAGTATCATCATCCAAAAGAAAGAATCACCCAATCATTGATGAACCCACTTGGTCTTCCTGTCAGACCTGGGCATGCTATATGTTCTTACTATAGACTCTATGGAATATGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCAATTCCTCAAAACTATGACTTGACCTCATCTGCTTTTCCTGCGCTTGATACATCTTTGATTAGTAGTCCAACAAGTTTTTCAACTGTCCAACCAACTGAGTCATCTCCATCTAAATTATCAACCGACAAAGTTCAACACTCTGACACAAAAGCTATAGAAGATTCATCGAAACAGGCTGATACTACTACACCAGATTCCTTCCCAACTACCTCACAGTCTTAA 1236 0.428 MPENIHPLRNSASNHSGDNIEEAIQRLKINENRDRDGAAQSSPFPERPGEPDCLYYLRTGMCGYGSNCRYNHPANVSPGTHYGEELPERIGQPDCEYFLKTGTCKYGSTCKYHHPRYRQGAAPVSFNSLGLPVRQEEKPCPYYMRTGSCKFGVACKFHHPQIGASPVAGSPTSTFLPTSGLPYVDGFSAWQLPRMSYLYGQGIQSYVPPFLSSPQGIIPAQNWNTYMGSMSSAMPTFLGSNFLYDTMNLGESLLGGQVINPTLPERPDQPECRYFMSTGTCKYGSDCKYHHPKERITQSLMNPLGLPVRPGHAICSYYRLYGICKFGPTCKFDHPVLAIPQNYDLTSSAFPALDTSLISSPTSFSTVQPTESSPSKLSTDKVQHSDTKAIEDSSKQADTTTPDSFPTTSQS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0205 411 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Lan11g0205 411 SUPERFAMILY CCCH zinc finger 269 295 IPR036855 GO:0046872
Lan11g0205 411 Gene3D - 264 348 - -
Lan11g0205 411 Gene3D - 46 124 - -
Lan11g0205 411 SUPERFAMILY CCCH zinc finger 311 336 IPR036855 GO:0046872
Lan11g0205 411 SUPERFAMILY CCCH zinc finger 94 116 IPR036855 GO:0046872
Lan11g0205 411 SUPERFAMILY CCCH zinc finger 133 161 IPR036855 GO:0046872
Lan11g0205 411 SMART c3hfinal6 309 336 IPR000571 GO:0046872
Lan11g0205 411 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Lan11g0205 411 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Lan11g0205 411 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Lan11g0205 411 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Lan11g0205 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Lan11g0205 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 335 IPR000571 GO:0046872
Lan11g0205 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872
Lan11g0205 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Lan11g0205 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 293 IPR000571 GO:0046872
Lan11g0205 411 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 9 390 - -
Lan11g0205 411 MobiDBLite consensus disorder prediction 362 380 - -
Lan11g0205 411 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Lan11g0205 411 MobiDBLite consensus disorder prediction 394 411 - -
Lan11g0205 411 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Lan11g0205 411 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Lan11g0205 411 Gene3D - 125 166 - -
Lan11g0205 411 MobiDBLite consensus disorder prediction 362 411 - -
Lan11g0205 411 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Lan11g0205 411 MobiDBLite consensus disorder prediction 1 22 - -
Lan11g0205 411 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Lan11g0205 411 PANTHER PROTEIN PHOSPHATASE RELATED 9 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0205 Lan-Chr11 1310691 1314688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0205 1 404 C3H Transcription Factor Family AT1G04990 46.651 4.67e-117 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan11g0205 zf-CCCH 2.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0205 - - vra:106765262 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1181 2 22958500 22962419 Lan11g0205 11 1310691 1314688 LSH
Lan11g0205 11 1310691 1314688 Lan9g1370 9 20773582 20777690 LSH