Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0204 ATGCAAGTTTCAGAAGTTCAACAGCTCCAACTCCAAATTCAACTCCAACATCATCACAACCAAGAGACACCGATGTGCAAGAAGATCCAAGTACAAGAAGATGAGAACAGCAAGGTGGTGGAAGGTGATGATTTCCTCATTCCACCTCTCAATTTCGCCATGGTTGATAATGGCATTTTCCGTTCAGGTTTCCCTGAACCGGTTAACTTCTCCTTCCTCCAAACTCTTCGTCTCCGTTCCATTATATATCTGTGTCCTGAACCGTACCCAGAGACCAACTTGGAGTTCCTTAAGTCAAACGGGATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCTTTCGTAAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTCTCCTTGATGTGAGGAACCACCCTGTTATTATTCACTGCAAACGGGGAAAGCACCGAACAGGTTGTTTAGTAGGATGCTATAGAAAAATGCAAAAATGGTGTTTGTCATCTGTGTTTGATGAATACCAACGCTTTGCAGCTGCAAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCATGAAGCATTTGCCTATATCATTTTCATGTTTGAAGAGGTAA 627 0.4226 MQVSEVQQLQLQIQLQHHHNQETPMCKKIQVQEDENSKVVEGDDFLIPPLNFAMVDNGIFRSGFPEPVNFSFLQTLRLRSIIYLCPEPYPETNLEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKMQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPISFSCLKR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0204 208 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 207 - -
Lan11g0204 208 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 14 207 - -
Lan11g0204 208 ProSiteProfiles Dual specificity protein phosphatase domain profile. 51 205 IPR020422 GO:0006470|GO:0008138
Lan11g0204 208 PRINTS Plant and fungal dual specificity phosphatase signature 46 63 IPR020428 GO:0016791
Lan11g0204 208 PRINTS Plant and fungal dual specificity phosphatase signature 83 96 IPR020428 GO:0016791
Lan11g0204 208 PRINTS Plant and fungal dual specificity phosphatase signature 102 116 IPR020428 GO:0016791
Lan11g0204 208 PRINTS Plant and fungal dual specificity phosphatase signature 119 133 IPR020428 GO:0016791
Lan11g0204 208 Pfam Tyrosine phosphatase family 46 198 IPR004861 -
Lan11g0204 208 ProSitePatterns Tyrosine specific protein phosphatases active site. 141 151 IPR016130 GO:0016311|GO:0016791
Lan11g0204 208 Gene3D Protein tyrosine phosphatase superfamily 45 195 IPR029021 -
Lan11g0204 208 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 193 IPR029021 -
Lan11g0204 208 CDD PFA-DSP_Siw14 46 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0204 Lan-Chr11 1290608 1293194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0204 31 208 Protein tyrosine phosphatase (PTP) family AT4G03960 74.860 5.87e-101 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0204 K18045 - gmx:100814279 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0204 11 1290608 1293194 Lan9g1372 9 20808005 20811487 LSH