Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0170 ATGGCCAAGAAGCGAAAGCTCCGATCCTCCGACTCCGAACCCGCCAAACAACCCGAACCTGAATCCCCTTCCCAACAGCAACAACAAACCCTAGGAGGAGAGGGACTCGAACAAGAACAACAATCCGTAGAGGAATACCAACACATACCCATCGAAGAAGAAGAAGAAGAACCACAAGAAGATGAAACCCTAGAAGATCAGAATCAGGAGCATGATGCTCAACGTTCAAACGATGCATCTGAATTGGTTAACGTTGAAGTAAACGGTGACGACAACAACAACAACGAAGAGGAAGAAGAAGAAGAAGACCTCGAATTGGAAGATGAACCTGTGGAGAAGCTTCTAGAACCTTTCACCAAGGAACAGCTTCACTCTCTTGTGAAACAAGCACTTGAGAAGTTCCCTGATTTCGTCGAAAACGTTCGCCACCTGGCTGATGTGGACCCCGCTCATCGCAAAATCTTCATCCACGGCCTTGGTTGGGACACAACCGCTGAAACCCTAATATCTGTTTTCTCAAAGTACGGCGAGATCGAAGACTGTAAGGCTGTTACCGATAAGCTCTCTGGGAAATCGAAGGGCTACGCGTTTATCCTTTTCAAGCATCGTAGTGGGGCCCGCAAGGCTCTGAAGCAGCCACAGAAGACGATTGGTAACCGAACCACGTCGTCGCAATTGGCCTCTGCTGGACCTGTTCCTGCACCACCTCCTGTGGCTCCTGCGGTTTCCGAGTATACTCAAAGGAAGATTTTTGTGAGCAATGTGAGTGCTGACATTGATCCACAGAAGCTGCTTGAGTTCTTCAGGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGGCTTGATAAGCAGACGGGGAAGCCCAAAGGGTTTGCGCTTTTCGTGTATAAATCGGTGGATAGTGCAAAGAAGGCTCTGGAAGATCCCCAGAAGCAGTTTGAGGGGCATGTTTTGTATTGCCAGAAAGCTGTTGATGGCCCTAAGGGGAAACAAGGGTATCATCAGCAACCACATCACCATCACAATCAGCAACAGCATCATTCCCACCACCATCACCAGCCCCACTATCAAAGGAAGGAGAGGAACAAGTATACTTCTGGTGGGCCTGCACATGGTGGTGGGCACTTGATGGCACCATCAGGTCCTCCTGTTGGATACAATCCCGGAGTGCCCGGGGTTCAAGGGTTGAATCCTGTGCTTGGTCAGGCGATATCGGCTTTGCTTACAACCCAAGGAGCCGGGTTGGGACTTGGTAACTTCCTTGGAGGTCTTGGTGGTGCACCTGTGAATCAGTCTGTTCCACCTGCGGGATACGGTAATCAGCCTGCTATGAACTATGGGAACCAGCAGGGGATGCAGCAGGGATACCAGAATCCTCAAATGGGGCAGAGCAGTGGTGGTAGGCCTCATCCTGGTGCTGGCGCCCCTTACATGGGTCATTAG 1443 0.5073 MAKKRKLRSSDSEPAKQPEPESPSQQQQQTLGGEGLEQEQQSVEEYQHIPIEEEEEEPQEDETLEDQNQEHDAQRSNDASELVNVEVNGDDNNNNEEEEEEEDLELEDEPVEKLLEPFTKEQLHSLVKQALEKFPDFVENVRHLADVDPAHRKIFIHGLGWDTTAETLISVFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRSGARKALKQPQKTIGNRTTSSQLASAGPVPAPPPVAPAVSEYTQRKIFVSNVSADIDPQKLLEFFRQFGEVEDGPLGLDKQTGKPKGFALFVYKSVDSAKKALEDPQKQFEGHVLYCQKAVDGPKGKQGYHQQPHHHHNQQQHHSHHHHQPHYQRKERNKYTSGGPAHGGGHLMAPSGPPVGYNPGVPGVQGLNPVLGQAISALLTTQGAGLGLGNFLGGLGGAPVNQSVPPAGYGNQPAMNYGNQQGMQQGYQNPQMGQSSGGRPHPGAGAPYMGH* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0170 480 MobiDBLite consensus disorder prediction 448 480 - -
Lan11g0170 480 MobiDBLite consensus disorder prediction 448 465 - -
Lan11g0170 480 MobiDBLite consensus disorder prediction 1 15 - -
Lan11g0170 480 MobiDBLite consensus disorder prediction 333 358 - -
Lan11g0170 480 Gene3D - 239 373 IPR012677 -
Lan11g0170 480 MobiDBLite consensus disorder prediction 16 45 - -
Lan11g0170 480 Gene3D - 41 232 IPR012677 -
Lan11g0170 480 CDD RRM_RBM24_RBM38_like 248 323 - -
Lan11g0170 480 Coils Coil 87 107 - -
Lan11g0170 480 SMART rrm1_1 153 225 IPR000504 GO:0003723
Lan11g0170 480 SMART rrm1_1 249 321 IPR000504 GO:0003723
Lan11g0170 480 MobiDBLite consensus disorder prediction 49 67 - -
Lan11g0170 480 MobiDBLite consensus disorder prediction 324 385 - -
Lan11g0170 480 CDD RRM_RBM24_RBM38_like 152 227 - -
Lan11g0170 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 229 IPR000504 GO:0003723
Lan11g0170 480 SUPERFAMILY RNA-binding domain, RBD 149 234 IPR035979 GO:0003676
Lan11g0170 480 MobiDBLite consensus disorder prediction 210 235 - -
Lan11g0170 480 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 467 - -
Lan11g0170 480 SUPERFAMILY RNA-binding domain, RBD 231 341 IPR035979 GO:0003676
Lan11g0170 480 MobiDBLite consensus disorder prediction 214 229 - -
Lan11g0170 480 MobiDBLite consensus disorder prediction 91 108 - -
Lan11g0170 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 221 IPR000504 GO:0003723
Lan11g0170 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 318 IPR000504 GO:0003723
Lan11g0170 480 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 467 - -
Lan11g0170 480 MobiDBLite consensus disorder prediction 1 108 - -
Lan11g0170 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 331 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0170 Lan-Chr11 1086613 1090773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0170 227 425 C2H2 Transcription Factor Family AT2G19380 26.389 4.40e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0170 K12741 - gmx:100792637 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1216 2 23297443 23301495 Lan11g0170 11 1086613 1090773 LSH
Lan11g0170 11 1086613 1090773 Lan9g1401 9 20990697 20993523 LSH