Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0165 ATGTCAAGTGGAGCAACTCACTGGTGTTACGCATGCAGGCAGCCAATTGTGCTTGAAGGGAGAGATGTCATCTGCCCTTACTGTGATGGAGGGTTCATACAAGAACTCAATGAGATACAAGAAACTGCACCCCAATTTACTGTTCCGTCGCAATCGGGAGAATCTCGTCAAATGCCTGACCTTTTTGATGCTATACATGCTTTTATGGGGCGGAGAGGTTCTGATCCTAGATTTGAGCTTATAGGTGCTGTTGATAATGTCATGAGGCAGAGAATGTCCGGAAGACATCCAAACTTTGATGTTAGAGGAAGCCCAAGAGGTGGTCCAAGGCGCGTTGATTTTGGGGACTATTTTATGGGCCCTGGATTGGAAGAACTTATCGAACAACTCACCACAAATGATCGGCATGGTCCACCCCCAGCTGCACGTTCTTCAATTGATGCAATGCCTACTATTAGGATCACACAGGCACATCTTCGCTCAGACTCACATTGTCCAGTTTGTAAAGACAAATTTGAACTCGGCTCTGAAGCTAGAGAGATGCCATGTAACCACATTTACCACTCTGACTGTATTGTTCCTTGGTTGATTCAGCATAACTCGTGCCCTGTTTGCCGTGTCGAGCTGCCACCTCAAGGACATGCTTGTGCTCGTCGTAGTCGAAGCTTGGCAGGAACTAATGCCAACAGCAACAGTGGCAGTGATAGTGGCTCCAGCGGCAGGGAGAATACCCATCAGAACCAAGGAAGGAGAAACCCATTATCATTTTTGTGGCCATTCCGTTCTTCGAATTCAAACAATAATAATCATTATACTCAAACTAGGGGAAGCAGCTCTTCTTCAACCACTCCTGACCAGCATGATGGAACAAGCTATAGTGGATGGCCCTTTGATTACTAA 900 0.4633 MSSGATHWCYACRQPIVLEGRDVICPYCDGGFIQELNEIQETAPQFTVPSQSGESRQMPDLFDAIHAFMGRRGSDPRFELIGAVDNVMRQRMSGRHPNFDVRGSPRGGPRRVDFGDYFMGPGLEELIEQLTTNDRHGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKDKFELGSEAREMPCNHIYHSDCIVPWLIQHNSCPVCRVELPPQGHACARRSRSLAGTNANSNSGSDSGSSGRENTHQNQGRRNPLSFLWPFRSSNSNNNNHYTQTRGSSSSSTTPDQHDGTSYSGWPFDY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0165 299 Pfam Ring finger domain 164 206 IPR001841 -
Lan11g0165 299 CDD RING-H2_RNF126_like 165 206 - -
Lan11g0165 299 PANTHER OS03G0351800 PROTEIN 103 281 - -
Lan11g0165 299 PANTHER OS03G0351800 PROTEIN 1 105 - -
Lan11g0165 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 281 - -
Lan11g0165 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 105 - -
Lan11g0165 299 MobiDBLite consensus disorder prediction 222 290 - -
Lan11g0165 299 ProSiteProfiles Zinc finger RING-type profile. 165 206 IPR001841 -
Lan11g0165 299 SMART ring_2 165 205 IPR001841 -
Lan11g0165 299 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Lan11g0165 299 MobiDBLite consensus disorder prediction 220 299 - -
Lan11g0165 299 SUPERFAMILY RING/U-box 145 212 - -
Lan11g0165 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 212 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0165 Lan-Chr11 1055161 1057542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0165 109 210 C3H Transcription Factor Family AT5G01980 44.231 1.46e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0165 K11982 - gmx:100813674 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1228 2 23371235 23373602 Lan11g0165 11 1055161 1057542 LSH