Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0153 ATGGCTTTCACACTAGAAAGATGTGAAGATAATAACATTGTGTTCAATGTGGAGTCTCAGAAATCAGTGCCTGCTCCATTTCTAACAAAGACATACCAACTTGTTGATGATTCTCACACTGATCATATTGTATCTTGGAGTCATGATCAAACCACATTTGTTGTGTGGAGACCCTCTCAGTTTGCTACAGATCTTCTTCCTAACTATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAATACTTATGGTTTCAAGAAAGTAGTTGCTGATAGGTGGGAGTTTTCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTCTATGTGAAATCCATAGAAGAAAAACCCTTCATCATAATCATCATCAACAACACTACCATGATCAACCACAAGATGAAGGTTTATGTTGGATTGATACTCCACTACAAACTTGTAAACCAAGCAATGATATTTTAACAGCACTTTCTGAAGATAATCAAAGACTGAGGAGAAAGAACTACATGCTCTTATCAGAACTCACTCACATGAAGAATCTTTACAATGATATCATATATTTCATACAAAACCATGTAAATCCTGCTCCTTTTGAACAAACAAGTAACATTGTTATTCCTAAGGTAGTAGAATTGGATTCATTACCTCAATCACCAAATGTTGCTGCTGTTATTAGATCAACCAAGAATCTTATTATGGATAAGTCTTTGGTAAATTGTAGTGAGGATTGTAATAGTTCTGTGAAGATCTTTGGTGTTCCACTTAGTGGTAAAAAGAGAGTGCACTCAGATAACATTGGTTAA 804 0.352 MAFTLERCEDNNIVFNVESQKSVPAPFLTKTYQLVDDSHTDHIVSWSHDQTTFVVWRPSQFATDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFSNEYFRKGAKHLLCEIHRRKTLHHNHHQQHYHDQPQDEGLCWIDTPLQTCKPSNDILTALSEDNQRLRRKNYMLLSELTHMKNLYNDIIYFIQNHVNPAPFEQTSNIVIPKVVELDSLPQSPNVAAVIRSTKNLIMDKSLVNCSEDCNSSVKIFGVPLSGKKRVHSDNIG* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0153 267 Gene3D - 19 118 IPR036388 -
Lan11g0153 267 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 263 IPR027725 -
Lan11g0153 267 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan11g0153 267 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan11g0153 267 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan11g0153 267 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 11 263 - -
Lan11g0153 267 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan11g0153 267 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
Lan11g0153 267 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan11g0153 267 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0153 Lan-Chr11 967615 969011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0153 13 262 HSF AT1G46264 47.697 7.26e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan11g0153 HSF_DNA-bind 2.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0153 K09419 - gmx:100806150 406.371