Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0142 ATGGAAGAATCATGTGAATTGCAATCAGGAGAAAATAATGTTTCCAAGTGGAAACTTATGAAAAATAAGAAAAGAAAGCTCAAAACACCTGTCCAAGTTGCAGGCCTGGAGAAATTTTATAATGAGCATAAATATCCCACAGAAGAAATGAAAGCGGAACTTGCTGTGGAGTTAGGGTTGACAGAAAAACAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAGCAGTTGTTAATTGCCGACAAGATCGTTCCAGCGGTGTCATCCAGGATCGTGGTAGTGGACTTGGCCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAAGTATCTGGATCCCAAAGAGGTTGAGAGCCAAGGCATACACAATAATGGTTTTTCAGCTGCAGATATGGCCTATGGACATAGGAACAAATTTACAGAAAATGTCACTGAAATGGAGGACACTTCATCTGAGAGTAGCTCATATTTGCAAGATATGATGTTCCCTCAAGGCCAGGATCCATATGATATGGAGTCTTCTAGATATCTAACATCTACGAGAGCTCTTCCACCCCTAAATCCCAAGAGTGCAATTAACATGAGACATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCCGTTAAGAAGCAATTAGGAAGGAATTATCGGGAAGATGGTCCGCTACTTGGTGTTGACTTTGATCCTCTCCCTCCAAGGGCATTTGAAGGCCAAAATGCAGGTCCGGTTCATGAACCGTTCGGTGTTGCAAATCCTGCTCTTCCAAATTCTCCAGATATCTCCCCTGTAAAAAGGCAACCTGGTCTTAGCTCTAGATATCCTTCACATATAGAAGGGATTGACTTTGGCTCCTTGCACGGCGGCTCTGGTTTCCAGGATAAGAAAGCTCGGCACAGTATAAAACAAAGGCAAACCTTTTACAGTATCAATCACTTTCCTGCCAGGAACTCTTCCCTGGATTTGCTTGAAGATGATAATGGAGAAGCATCTGCTTATAATTGCACTAAGAATCATAGAATAGGTGTTATGCTTGGTGTTGAGGGGATGAGATCTGATTCTACTTCCAACCATAGCGATCACTATGAAGAGAACCTCGTGGTTAAGCAGACAGACTTGCTGCCACATGGCTATGATAATCTCAATCTGAAGAATGTCCAAAGGAGTGGACATGTCAAGTCCAAGCCTTCACATTCAGTCCGTAATTCTCAAATTTCTGTTGATACTGAAGAAAGAGGGACACCTACTAGGATGTCAAAGGAGGAGATGTTTAAGGGGAGCAGGAAGGCAAAAAACCAACAACGCAATGCAGATGGAGCAAGGATGCTTTCAAAAGAAATCGTGGATGCAAAGAGAATTAAAGTTGATCCACTTCAACAATACCATGTGAAACAAGCACCCATTGCTGAGATTGACCAAAGGAAAATTCAGAGATCTGCTGTACAGATACCATCTAGCTTTAGCGAGGATGAAACTGCTGATACAAGTTCCTCACTGGATTAA 1551 0.4159 MEESCELQSGENNVSKWKLMKNKKRKLKTPVQVAGLEKFYNEHKYPTEEMKAELAVELGLTEKQVSGWFCHRRLKDKRLLKDEAVVNCRQDRSSGVIQDRGSGLGQDSCGSTKHGDYKYLDPKEVESQGIHNNGFSAADMAYGHRNKFTENVTEMEDTSSESSSYLQDMMFPQGQDPYDMESSRYLTSTRALPPLNPKSAINMRHKPSGYLKVKGEIENAAITAVKKQLGRNYREDGPLLGVDFDPLPPRAFEGQNAGPVHEPFGVANPALPNSPDISPVKRQPGLSSRYPSHIEGIDFGSLHGGSGFQDKKARHSIKQRQTFYSINHFPARNSSLDLLEDDNGEASAYNCTKNHRIGVMLGVEGMRSDSTSNHSDHYEENLVVKQTDLLPHGYDNLNLKNVQRSGHVKSKPSHSVRNSQISVDTEERGTPTRMSKEEMFKGSRKAKNQQRNADGARMLSKEIVDAKRIKVDPLQQYHVKQAPIAEIDQRKIQRSAVQIPSSFSEDETADTSSSLD* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0142 516 MobiDBLite consensus disorder prediction 494 516 - -
Lan11g0142 516 MobiDBLite consensus disorder prediction 405 428 - -
Lan11g0142 516 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Lan11g0142 516 MobiDBLite consensus disorder prediction 405 434 - -
Lan11g0142 516 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 516 - -
Lan11g0142 516 CDD homeodomain 23 78 IPR001356 GO:0003677
Lan11g0142 516 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 516 - -
Lan11g0142 516 Pfam Homeodomain 23 78 IPR001356 GO:0003677
Lan11g0142 516 Gene3D - 13 94 - -
Lan11g0142 516 MobiDBLite consensus disorder prediction 492 516 - -
Lan11g0142 516 SUPERFAMILY Homeodomain-like 21 85 IPR009057 -
Lan11g0142 516 SMART HOX_1 21 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0142 Lan-Chr11 893664 898951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0142 22 516 Homeobox Transcription Factor Family AT4G03250 40.607 9.39e-83 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lan11g0142 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0142 - - gmx:100803515 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1246 2 23508385 23513171 Lan11g0142 11 893664 898951 LSH
Lan11g0142 11 893664 898951 Lan9g1427 9 21158633 21162892 LSH