Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0135 ATGATGGCTTTCTTTAGGAACTTTCAAAATGATACAGTCTCACATAGTGTCATGGAAGATAAAGTCAAAGGACACAATGCGAATAGTGTACATAGATTGGTAGGTAATCAATGTCCTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACACGGAGGCACAATATCAGAGTGATGGTGAACCAGATGGTGCCAGTAGACTTCAAAATGAGGAGGCAGCAATTGATGATGGAGCTGCTAATAGAGAATCAAACTTACAGACTGCTGCTAGTAAAACAACTACGGTCGGGAGGTGGGGTTCGACATTTTGGAAGGACTGCCAACCTATGCATCCACAAAATGGTTCTGAATCTGGGCATGAATCAAAAAGTGAATCGGACTATAGAAATGAAGATGGATCTGAAGGTAATTCATTGGATGGAAAAGGGGAAAGATTAGACTCAGAAGATGATGAACAAAAGGAAGAAGGAAAAGGTCCAGTAGGCCATCATGATGCTCCTGCTGAAGAAATGTTGTCTGATGAATATTATGAGCAGGATGAGGCAGAGCAGCGTAACTCATTGCAGCAGCGGGGGATTCATAAGTTCACTAGATCGAATTTGTGGCCTCAACAAGTGTCCACTTTTCCCAATAGAAATTCAAATAAGAAATCTAGGATTTCAAATGATGTCGAAGAAGATGATGATGATGGTGATAACGACGATGGTGACAGTGATGCTGATTATGAAGAGGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGCCACAAGTGTTCATGCAGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCATATGAAGATGATGATAGTGATGAAAATGTAGATGTCTCAGATGACGACGACTCTTTCTATGGTAAAAAACCCAAGGGAAGGCAACAAGCTAAAGTTGGACAAAGCCTAAAATCTACTAGAGATCGCAAAACTTATCCGGCATCTGGTCGACAAAGAAGAGTTAAATCAACTTTTGAAGACAATGAGTCAATAGCAGATGATTCTGACAGTGGTAGTGACGAGGATTTCAAAAGCATTAAAAAGAGAGGTGTTCATGTCCGCAGGAATAATGGCTGCTCTTCCTCACCCACAAGTTTTTCTATGCGCAACAATGAGGTTCGCACTTCTACTAGGACAGTTAGGAAGGTATCATATGTTGAAAGTGATGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCCCAAAAGGAAGAAATTGAAGAAGATGATGCTGACTACATTGAAAAGGTGCTTTGGCATCAGCCGAAAGGCATGGCCGATGATGCTCAAAGGAATAATAGATCAACATCCCCCATTTTAATGAGTCACTTGTTTGATTCTGAGGTTGATTGGAATGAGATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAATCTTTTGCTGACCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAGATAATGGAAGACATTAAGCATAGGAAGAGTATCTCAAGAGAGGAGATTGAGGTCAATGATGTCAGTAAGGAGATGGATTTAGATATTATCAAACAAAACAGTCAGGTCGAAAGAATTATTGCAGATAGGATCAGCAAGGATAGTTCTGGAATGGTTGTTCCAGAATACCTGGTCAAGTGGCAAGGGCTATCTTATGCTGAAGCAACTTGGGAAAAGGACATTGATATCACTTTTGCTCAGCATGTTATTGATGAGTATAAGGCTCGTGAGGCTGCAATGTCGGTGGTTCAAGGAAAGACGGTAGATTCCCAGCGTAAGAATAGCAAAGCAAGTTTGCGGAAACTTGAGGAACAACCCGAATGGTTGAAAGGTGGAAAGCTCCGTGATTATCAACTAGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGGAACGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTCCAGTCGGTATCAATGCTAGGTTTTCTACAGAATGCCCAGAAAATCCATGGTCCTTTTCTTGTAGTTGTTCCATTGTCTACTTTATCAAACTGGGCCAAAGAATTCCGAAAGTGGCTTCCTGATATGAACATTATTGTATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAGTACGAGTTTTATGATGATAAGAAGGCTGGCAGACCAATAAAATTTAATGCACTGTTGACTACATATGAAGTAGTTTTGAAGGACAAGGCTGTTCTCTCCAAGATCAAATGGTGTTATCTTATGGTAGATGAGGCTCATAGACTTAAAAATAGTGAGGCGCAGTTGTACACAGCACTTTCAGAATTTAGCACCAAGAATAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGACGCTAACAAGTTCAAGAGCAAGGATGATTTTGTTCAAAATTATAAAAATCTGAGTTCTTTCAATGAGAATGAGCTTGCAAATCTTCATATGGAGTTAAGACCTCACATACTTCGAAGAGTTATCAAAGACGTGGAGAAATCATTACCCCCAAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTACTATAAGTGGATTTTGGAACGCAACTTTCATGATTTGAACAAGGGAGTTCGTGGTAACCAGGTTTCTCTTCTCAATATTGTGGTGGAACTGAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGCGCCGACCATGGTTATGGTGGAGACTCTGTTGATAACAGTAAGCTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTGGTCATACTTGATAAGCTACTTGTTAGGTTGCATGAAACCAAGCATCGTGTTCTAATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGCAGAGTATATGTCACTTCGTGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTCCGACATCAGGCAATGGAGCATTTCAATGCCCCAGGTAGTGATGATTTTTGCTTCCTTCTCTCAACGCGAGCAGGGGGTCTGGGCATCAACCTTGCCACGGCAGATACTGTAATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGCAGAGCCCATAGAATTGGGCAACAGGAAGTTGTTAACATATATAGGTTTGTAACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTGATTCAAAAACTTAATGCAGAGGGTAGGCTGGAGAAGAAAGAGGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGTTGTCTGCAATTTTACGGTTTGGAGCAGAAGAACTTTTTAAGGAAGAAAGAAACGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGACGAGATTCTTGAAAGAGCAGAGAAGGTCGAAGAGAAAGAAGCTGAGGGAGAGGATGGACACGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTCGTAATGATGAAGACGATGGAGGTTTCTGGAGTCGGATGATAAAGGCTGATGCTGTATTCCAAGCAGAGGAAGCTCTAGCTCCACGTTCTGCAAGGAATATTAAAAGTTATGCAGAAGCTAATGAGTATGACAGAAGTAATAAAAGAAAAAAGAAGGAACCTGAACCTCCTGAGCGAGTTCAGAAACGCCGGAGAGCAGAGTGTTCGGCTCCTGCAGTACCATTGATTGATGGAGCATTTGTGCAAGTGAGAAATTGGTCATATGGGAATTTATCCAAAAGAGATGCACAACGATTTTCTCGTTCGGTTATGAAATATGGAATCGAGGATCAAATGAACTTAATTGTTGCCGAGGTTGGTGGTGCTGTTGGAGCAGCTCCACCTGAAGCACAGACTGAAATCTTCAATGCTCTAATTGATGGCTGTACTGAAGCAGTGGAACATGGAAGTGTAGATCCCAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCAGTTAAGGCAAATGATTTACTTACCCGTGTCCAGGAACTTCAACTCCTGGCAAAGCGCATCAGTAGATATGAAGATCCTATTGCACAATTTCGTGTTTTATCATATCTCAAGCCTTCAAATTGGTCGAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTAGGAGTACATTACCACGGATTTAGTAATTGGGAGAAGGTTAGATTAGATGAAAGGCTTGGTCTTACGAAAAAGATTGCCCCAGCAGAACTTCAACACCATGAAACTTTCCTGCCAAGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGGAAACCATGCCAATAGCAGAGTTGGCCGGAAGTCGTCTAAGAAAGAGAGAGAAAATATGATGAACAACTCGCTGTTGCGTGGGCAGGAAAAGAAAAAACCAGGTTCTGCTAAAGTTAGTGTCCAAATGAGAAAGGATAGACTTAAGAAACCCCAAAAGGTTGAACCTATAGTAAAAGAGGAGGGTGAAATGTCTGACAATGACGAAGTATATGAGCAATTCAAGGAGGTAAAATGGATGGAGTGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACCTTGAAACGTCTTCACAGATTGCAGACAACAAGTGCCAATCTTCCCAAGGAAAAGGTGCTTCAAAAAATACGCAACTATTTACAACTTCTTGGTCGAAGGATAGATCAAATTGTGTTAGATCATGAAGTGGAACCCTACAAGCAAGATAGAATGACAGTGCGGCTCTGGAAATATGTCTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAGCAACAAGATGAGGCCGGGGTTGGCCCTTCTCATGCCAATGGTTCAGCATCTGTTCCATATAGCAGAAACGGAAACCCGTTCCCTCGCCATATGGAGAGGCAAAGAGGATACCAAAATAGGGCTAACTACCAAATGTCAGAACCAGTTAATAATACCGGGAAATCTGAGGCTTGGAAACGGAGAAGAAGAGCTGAAAGTGTCGATCAATTCCAGGGGCAGTCGCCACCTCAAAGAACCATGAGTAATGGAATCCGGATTTCTGATGCTAGTGCACAAGGCATTCTTGGGGCTGGACCATCTGGCAAACGTTTTGTTAGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAAACAAGGCTCCACTTCAGGATCTGAGAAATATCTCTACACAGTGGGATTTGCAATCTCTAACGAGGTGGCTGAAGCCGATGATCTGGTGCAAGATGAAATTGAGCTTTGA 5370 0.4156 MMAFFRNFQNDTVSHSVMEDKVKGHNANSVHRLVGNQCPDATSSEKEFDMNTEAQYQSDGEPDGASRLQNEEAAIDDGAANRESNLQTAASKTTTVGRWGSTFWKDCQPMHPQNGSESGHESKSESDYRNEDGSEGNSLDGKGERLDSEDDEQKEEGKGPVGHHDAPAEEMLSDEYYEQDEAEQRNSLQQRGIHKFTRSNLWPQQVSTFPNRNSNKKSRISNDVEEDDDDGDNDDGDSDADYEEEDEADEDDPDDADFEPATSVHAANKDKDWEGEGSYEDDDSDENVDVSDDDDSFYGKKPKGRQQAKVGQSLKSTRDRKTYPASGRQRRVKSTFEDNESIADDSDSGSDEDFKSIKKRGVHVRRNNGCSSSPTSFSMRNNEVRTSTRTVRKVSYVESDESEEADEGKKKKSQKEEIEEDDADYIEKVLWHQPKGMADDAQRNNRSTSPILMSHLFDSEVDWNEMEFLIKWKGQSHLHCQWKSFADLQNLSGFKKVLNYTKKIMEDIKHRKSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDSSGMVVPEYLVKWQGLSYAEATWEKDIDITFAQHVIDEYKAREAAMSVVQGKTVDSQRKNSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQKIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKAGRPIKFNALLTTYEVVLKDKAVLSKIKWCYLMVDEAHRLKNSEAQLYTALSEFSTKNKLLITGTPLQNSVEELWALLHFLDANKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEDGHELLSAFKVANFRNDEDDGGFWSRMIKADAVFQAEEALAPRSARNIKSYAEANEYDRSNKRKKKEPEPPERVQKRRRAECSAPAVPLIDGAFVQVRNWSYGNLSKRDAQRFSRSVMKYGIEDQMNLIVAEVGGAVGAAPPEAQTEIFNALIDGCTEAVEHGSVDPKGPLLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGVHYHGFSNWEKVRLDERLGLTKKIAPAELQHHETFLPRAPNLRDRANALLEQELAVLGGNHANSRVGRKSSKKERENMMNNSLLRGQEKKKPGSAKVSVQMRKDRLKKPQKVEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLQKIRNYLQLLGRRIDQIVLDHEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHANGSASVPYSRNGNPFPRHMERQRGYQNRANYQMSEPVNNTGKSEAWKRRRRAESVDQFQGQSPPQRTMSNGIRISDASAQGILGAGPSGKRFVSEKPYRTQPGGFPSKQGSTSGSEKYLYTVGFAISNEVAEADDLVQDEIEL* 1790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0135 1789 SMART chromo_7 424 505 IPR000953 -
Lan11g0135 1789 SMART chromo_7 535 594 IPR000953 -
Lan11g0135 1789 Pfam Helicase conserved C-terminal domain 945 1058 IPR001650 -
Lan11g0135 1789 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 642 814 IPR014001 -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 1740 1760 - -
Lan11g0135 1789 CDD CD2_tandem 535 591 - -
Lan11g0135 1789 Pfam Chromo (CHRromatin Organisation MOdifier) domain 538 592 IPR023780 -
Lan11g0135 1789 Coils Coil 1782 1789 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 189 217 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 1465 1512 - -
Lan11g0135 1789 Coils Coil 1142 1162 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 103 419 - -
Lan11g0135 1789 Pfam SNF2-related domain 649 918 IPR000330 GO:0005524|GO:0140658
Lan11g0135 1789 MobiDBLite consensus disorder prediction 1634 1662 - -
Lan11g0135 1789 SUPERFAMILY Chromo domain-like 516 592 IPR016197 -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 103 117 - -
Lan11g0135 1789 Gene3D - 410 537 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 225 257 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 366 393 - -
Lan11g0135 1789 Pfam Domain of unknown function (DUF4208) 1538 1630 IPR025260 -
Lan11g0135 1789 ProSiteProfiles Chromo and chromo shadow domain profile. 537 593 IPR000953 -
Lan11g0135 1789 Coils Coil 1088 1108 - -
Lan11g0135 1789 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 114 1680 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 1492 1512 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 394 419 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 276 292 - -
Lan11g0135 1789 Gene3D - 861 1089 IPR027417 -
Lan11g0135 1789 Gene3D - 539 591 - -
Lan11g0135 1789 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 948 1099 IPR001650 -
Lan11g0135 1789 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 114 1680 - -
Lan11g0135 1789 SMART ultradead3 626 825 IPR014001 -
Lan11g0135 1789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 851 IPR027417 -
Lan11g0135 1789 Gene3D - 1355 1464 - -
Lan11g0135 1789 Gene3D - 621 860 IPR038718 -
Lan11g0135 1789 SMART helicmild6 974 1058 IPR001650 -
Lan11g0135 1789 ProSiteProfiles Chromo and chromo shadow domain profile. 424 512 IPR000953 -
Lan11g0135 1789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 854 1134 IPR027417 -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 118 171 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 1218 1248 - -
Lan11g0135 1789 SUPERFAMILY Chromo domain-like 420 504 IPR016197 -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 321 340 - -
Lan11g0135 1789 MobiDBLite consensus disorder prediction 1219 1247 - -
Lan11g0135 1789 CDD CD1_tandem 422 502 - -
Lan11g0135 1789 CDD SF2_C_SNF 934 1069 - -
Lan11g0135 1789 SMART DUF4208_2 1526 1631 IPR025260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0135 Lan-Chr11 838835 857149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0135 652 1085 RAD5 or RAD16-like Gene Family AT1G02670 26.337 6.98e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan11g0135 SNF2_N 8.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0135 K11367 - gmx:100792398 2880.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1250 2 23538191 23556780 Lan11g0135 11 838835 857149 LSH