LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan11g0114	ATGGACAAACATTCAGGGGATTCTATGCCAACTCATGGTGCTAAAGGTTCGCCTGAGATTTTATCACTTAATGTTGCCAAAAAAGTTGGAAGCAACACATGGGGAATACCAAGTGGGGCTGATGCATTTCATGCCTCAAGTGACGTTAGCTTATTTTCTAGTTCGCTTCCTATTCTTCCACATGGAAAAGTAAATTTTACTGATTATGAGCATTATGGCCAATCTGCCGATGACAAGTCTCCAATATTGGACAAAGTCCACAAAGAGGATGAGGGACAAGATCCACTTAAAGACATTACAGCCAATGCAATGGGAAAGATGCTTCCCGATGATGAAGATGACCTATTAGCTGGGATAATGGATGATTTTGACCTAAGTAGGTTGCCCAGTCAGCTGGAGGATCTAGATGAAAATGATCTTTTTGGCAGTGGAGGCGGGCTGGAAATGGATTTCGAACCCCAAGAGAGCCTTAGTATTGGTATTTCAAAGATAAGCTTATCTGATGGAGTCCCTTCAAATGGTTTTGGTCATTTTGCAATCCCCAATTGCATAGGAGCTGTGGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGAGGAACATCAACAGTAATGTGGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGAGATATCAGAACATTGTACACTGCTTGCAAGCATAGAGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGAAGAAAGCTTGACATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGATCTTCGTCAAATATTTGGAGCATATGGGGAGGTCAAAGAGATCAGAGAAACACCTCATAAGAGGCACCATAAGTTTATTGAATTTTATGATGTTAGAGCAGCAGAGGTTGCTCTTAAAGCATTAAATCGAATTGACATTGCTGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTCGAAACTTGATGCAACAAATGTCTGAGCTTGAGCAAGATGAAACTCGAACTTTTAGGCACCAAGTGGGTTCACCTATTGCCAATTCTCCTCCTGGTAACTGGGCACACTTTGGGAGTCCAGTCGAACATAATCCATTAGGTTCTTTCAGCAAATCTCCCGGTTTGAGTTATGGCAGCCCTATGAATACCAGTCATTTGCCCGGATTAGGAGCGATTCTTTCTCCACATTTGTCATCCTCTCCAAAGATTGCACCAATTGGCAAGGACCTTGGAAGGGCTAATAATGCAAATCAGATATTTGCAAGCACTGGATCTTCACAAGGGGCGGCTTTTCAGCACTCCATGTCCTTTCCTGATCATAAAGTTAGCCCTATGCCTATATCTACGTTTGGTGAATCAAAGTCAAGTTCTTCAAGTATTGGAACACTGTCTGGTCCTCAATTTCTGTGGGGAAGTCCAATTCCTAACTCAGAGCATTCAAACACATCTGCATGGTCTTCAACTTCTGGGAGTCTTCCATTTACTTCCAGTGGACAAAGGCAGGGTTTCCCATATACTAGTCAGCTCAATTCGTTTCTTGATTCTCATCCGCATCATCATGTGGGATCTGCTCCATCCGGCCTTCCCTTTGATAGGAATTTTAGCTACTATCCAGAGTCACCTGAAACTTCTGTCAAGAGTTCAGTTGCATATGGAAGTTTGAATCACGGCGATGGGAATTTTTTTATGAACATGGGTGCTCGTGCATCTGTAGGAGTTGGGGTTGGCTTTTCAGAAAACACGACTGGAATTAGTTCACTTAATTTCAGAATGATGTCACAGCCTAGGCATGGTTCCTTGTTCCTAGGAAATGGTTTGTATTCTGGACCAGGAGCAACAAACACCGATGGATTGGTTGAACGAGGCCGAAATAAGCGACCTGACAATAATGGGAACCAAATTGATAGCAAGAAGCAATACCAGCTTGATCTGGACAAAATTATGAAGGGAGAAGACACAAGGACTACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAATCTGCTGCTTGCTGCTATTGATGAGAATCACAAGGGTAGTTATGACTTCCTCTATTTGCCAATTGACTTTAAGAACAAGTGCAATGTGGGTTATGCTTTCATCAACATGGTGTCTCCTTCATTCATCATCCCTTTCTATAAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCAATGGCATATGCCCGTATCCAAGGGAAGAGTGCCCTTGTGACACATTTTCAGAACTCAAGCCTAATGAACGAGGATAAGCGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGATTGGTGACCAGGAACATTTCCTCTCAAGCAATCTGAATATATGCATTCGCCAACCGGATGGTTCTTACTCGGATGATTTGTTGGAGAGCCCGAAGGGCAATTCGATTGAAAAGCTATGTTAG	2562	0.4251	MDKHSGDSMPTHGAKGSPEILSLNVAKKVGSNTWGIPSGADAFHASSDVSLFSSSLPILPHGKVNFTDYEHYGQSADDKSPILDKVHKEDEGQDPLKDITANAMGKMLPDDEDDLLAGIMDDFDLSRLPSQLEDLDENDLFGSGGGLEMDFEPQESLSIGISKISLSDGVPSNGFGHFAIPNCIGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEVALKALNRIDIAGKRIKLEPSRPGGARRNLMQQMSELEQDETRTFRHQVGSPIANSPPGNWAHFGSPVEHNPLGSFSKSPGLSYGSPMNTSHLPGLGAILSPHLSSSPKIAPIGKDLGRANNANQIFASTGSSQGAAFQHSMSFPDHKVSPMPISTFGESKSSSSSIGTLSGPQFLWGSPIPNSEHSNTSAWSSTSGSLPFTSSGQRQGFPYTSQLNSFLDSHPHHHVGSAPSGLPFDRNFSYYPESPETSVKSSVAYGSLNHGDGNFFMNMGARASVGVGVGFSENTTGISSLNFRMMSQPRHGSLFLGNGLYSGPGATNTDGLVERGRNKRPDNNGNQIDSKKQYQLDLDKIMKGEDTRTTLMIKNIPNKYTSNLLLAAIDENHKGSYDFLYLPIDFKNKCNVGYAFINMVSPSFIIPFYKAFNGKKWEKFNSEKVASMAYARIQGKSALVTHFQNSSLMNEDKRCRPILFHSEGQEIGDQEHFLSSNLNICIRQPDGSYSDDLLESPKGNSIEKLC*	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan11g0114	853	CDD	RRM3_MEI2_like	698	783	IPR034454	-
	Lan11g0114	853	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	12	850	-	-
	Lan11g0114	853	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	284	357	IPR000504	GO:0003723
	Lan11g0114	853	CDD	RRM1_MEI2_like	198	274	IPR034453	-
	Lan11g0114	853	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	201	265	IPR000504	GO:0003723
	Lan11g0114	853	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	286	351	IPR000504	GO:0003723
	Lan11g0114	853	Gene3D	-	188	282	IPR012677	-
	Lan11g0114	853	Pfam	RNA recognition motif 2	695	791	IPR007201	-
	Lan11g0114	853	SUPERFAMILY	RNA-binding domain, RBD	697	781	IPR035979	GO:0003676
	Lan11g0114	853	SMART	rrm1_1	200	268	IPR000504	GO:0003723
	Lan11g0114	853	SMART	rrm1_1	697	773	IPR000504	GO:0003723
	Lan11g0114	853	SMART	rrm1_1	285	353	IPR000504	GO:0003723
	Lan11g0114	853	Gene3D	-	283	381	IPR012677	-
	Lan11g0114	853	MobiDBLite	consensus disorder prediction	655	677	-	-
	Lan11g0114	853	MobiDBLite	consensus disorder prediction	520	541	-	-
	Lan11g0114	853	CDD	RRM2_MEI2_like	283	353	-	-
	Lan11g0114	853	SUPERFAMILY	RNA-binding domain, RBD	196	359	IPR035979	GO:0003676
	Lan11g0114	853	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	199	272	IPR000504	GO:0003723
	Lan11g0114	853	PANTHER	PROTEIN MEI2-LIKE 2	12	850	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan11g0114	Lan-Chr11	659304	666556	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan11g0114	194	430	Eukaryotic Initiation Factors Gene Family	AT1G71770	24.908	4.11e-07	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan11g0114	-		-	gmx:100812324	1360.9