Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0113 ATGCAGCAGCCAGATCATAGAAAAAAGAGTTCAACGGAAATGGATTTTTTCTCTGAATATGGTGATGCCAACCGCTACAAAATTCAAGAAGTCGTTGGGAAAGGAAGTTATGGTGTTGTCTGTTCAGCCATTGACACTCAGACTGGTGAAAACGTAGCCATAAAAAAGATTCATGATATCTTTGAGCATATATCCGATGCTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTACGCCATCCTGACATTGTTGAAATTAAACACATTATGCTGCCTCCTTCTAGGAGGGACTTCAAAGATATTTACATTGTTTTTGAGCTCATGGAGTCTGATCTGCATCAAGTCATTAAAGCTAATGATGACCTAACGAAAGAGCACTATCAGTTTTTTCTATACCAGTTACTTCGAGCACTGAAGTATATCCACACTGCCAATGTCTACCATCGAGACTTGAAGCCAAAGAATATATTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGCTTAGCTAGAGTTGCTTTCAATGACACACCAACAACTGTATTTTGGACGGACTATGTTGCTACAAGGTGGTATAGAGCACCAGAGCTCTGCGGATCATTTTGCTCAAAGTATACACCAGCAATTGATATTTGGAGCATAGGTTGCATCTTCGCTGAAGTATTAATAGGAAAGCCACTTTTTCCTGGAAAAAATGTTGTCCATCAGTTAGATTTGATGACAGATTTGCTTGGGACTCCCTCACTGGATACTATATCCCGGGTACGCAATGATAAGGCGAGGAGATACCTAACTAGTATGAGGAAGAAGCAGCCTGTACCGTTTGCACAAAAATTTCCTAATGCAGATCCTTTAGCACTCCGACTATTGGAAAGATTGCTTGCTTTTGATCCGAAGGACCGACCTACTGCCGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTCTCACGAATTGAGAGGGAGCCATCTTGCCAGCCTATTACGAAAATGGAGTTTGAATTTGAAAGGAGAAGAGTCACAAAGGAAGAAATCCGAGAGCTTATTTTCCGCGAGATTCTAGAGTACCATCCTCAACTGCTGAAAGACTACTTAAATGGAACAGAGAGAACTAATTTTCTTTATCCAAGTGCTGTGGATCAGTTCAAAAACCAGTTTGCTCATCTTGAAGAAAATGGTGGTAAAAGTAGTCCAGTCATGCCACTTGAAAGAAAGCATGCATCACTTCCCAGGTCAACAATTGTACATTCGAATATGGCACTGCCAAAACAGCAATCAAATATTGCTTCCTCCAAAAACCGTCAAACAGCTGAAGAATATAATAACATTCCTAGAGATGCGGAAAACCCCGTGGCAAGGTCCATTCAGGGAATGCAAAGAATTCCATTGGTAAAACCTGGTAAAGTTGTTGGGCCAGTTGTTCCATACGAGTATGCGAGTGTCGTCAAGGATTCTTATGATCCAAGGACATTCATAAGAGGTTCTGTTCTTCCTTCCCGACCTATACCACCGACATATTATTATCAAAGATCTAGCTCTGGAAATCAAGAAGAGCCAGCACCAATAGAAGCTGATAAGGGTGTGTCTTTACAAGCAAACCATGCTCAACAGCAATGTGGTGTCAATGCCAGAATAGCAACAGATGTAGCTATTAATATCGATACTAACCCCTTTTTCATGACAAGGGCAGGAGTGAACAAGATAGAACGAGATGATCGGATAGCTATTGACACAAACTTGCTGCAGCCGAAGGCTCAATATGGTGGTATTAGTGCAGGTGCTGGTGCTGGTGTCACTGCTCATAGAAAAGTTGGACCTGTTCAGTATGGTGTGACGACAAGGATGTTCTAG 1863 0.416 MQQPDHRKKSSTEMDFFSEYGDANRYKIQEVVGKGSYGVVCSAIDTQTGENVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYIVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLSRIEREPSCQPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYLNGTERTNFLYPSAVDQFKNQFAHLEENGGKSSPVMPLERKHASLPRSTIVHSNMALPKQQSNIASSKNRQTAEEYNNIPRDAENPVARSIQGMQRIPLVKPGKVVGPVVPYEYASVVKDSYDPRTFIRGSVLPSRPIPPTYYYQRSSSGNQEEPAPIEADKGVSLQANHAQQQCGVNARIATDVAINIDTNPFFMTRAGVNKIERDDRIAIDTNLLQPKAQYGGISAGAGAGVTAHRKVGPVQYGVTTRMF* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0113 620 SUPERFAMILY Protein kinase-like (PK-like) 22 321 IPR011009 -
Lan11g0113 620 ProSitePatterns MAP kinase signature. 61 164 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lan11g0113 620 SMART serkin_6 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0113 620 ProSiteProfiles Protein kinase domain profile. 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0113 620 CDD STKc_TDY_MAPK 25 362 - -
Lan11g0113 620 Pfam Protein kinase domain 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0113 620 Gene3D Transferase(Phosphotransferase) domain 1 112 340 - -
Lan11g0113 620 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 495 - -
Lan11g0113 620 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524
Lan11g0113 620 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 495 - -
Lan11g0113 620 Gene3D Phosphorylase Kinase; domain 1 41 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0113 Lan-Chr11 644271 649914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0113 1 464 MAP Kinase Gene Family AT2G42880 83.405 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lan11g0113 Pkinase 5.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0113 - - gmx:100811788 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1275 2 23726758 23732448 Lan11g0113 11 644271 649914 LSH
Lan11g0113 11 644271 649914 Lan9g1450 9 21314044 21319586 LSH
Lan2g1275 2 23726758 23732448 Lan11g0113 11 644271 649914 PCT
Lan9g1450 9 21314044 21319586 Lan11g0113 11 644271 649914 PCT
Lan11g0113 11 644271 649914 Lan2g1275 2 23726758 23732448 PCT
Lan11g0113 11 644271 649914 Lan9g1450 9 21314044 21319586 PCT