Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0106 ATGGCTACTCAACACTTAACACCTTCTATACATAATAATAATCAAGATCACCTACTGCTAATACCAGCCATGGAGCTTGATCCAAGTAATATTGAAGGAGGAGGAACAGAAGGGTGTTCTTCTCATCAGAAGAAAACAGGAAGAGGGAAAATAGAAATCAAGAGGATCGAAAACACAACTAATAGACAAGTTACTTTCTGCAAACGCAGAAATGGGTTGCTCAAGAAAGCTTATGAACTATCAGTGTTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCTAACCGTGGTCGACTCTATGAATATGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTACAAAAAAGCATCTGCTACTTCCACAAATGCAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAGGAGTCATCCAAATTAAAGAGACAGATCCGAGACATTCAGAATCTGAACAGGCACATTCTTGGTGAATCACTTAGCTCTCTAAGTCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAGTTGAGCTGCAAAACCATAATAACTATCTGAGAGCTAAGATAGCTGAATATGAGAGAGCACAACAACAGGAACCAAATATGATGCAGCAGGGAAATGTGTGTGAGACCATAGCATCACAACAATATGATAGGAATTTCTTCCCAGTAAATCTCCTAGATCCCAATCATCAATATTCACGTCAAGATCACACTGCTCTCCAACTTGTTTGA 816 0.3946 MATQHLTPSIHNNNQDHLLLIPAMELDPSNIEGGGTEGCSSHQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVRGTIERYKKASATSTNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGESLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREVELQNHNNYLRAKIAEYERAQQQEPNMMQQGNVCETIASQQYDRNFFPVNLLDPNHQYSRQDHTALQLV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0106 271 ProSiteProfiles MADS-box domain profile. 46 106 IPR002100 GO:0003677|GO:0046983
Lan11g0106 271 SUPERFAMILY SRF-like 47 124 IPR036879 GO:0003677|GO:0046983
Lan11g0106 271 PANTHER SERUM RESPONSE FACTOR HOMOLOG 37 263 - -
Lan11g0106 271 Pfam K-box region 130 216 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan11g0106 271 Coils Coil 166 186 - -
Lan11g0106 271 SMART madsneu2 46 105 IPR002100 GO:0003677|GO:0046983
Lan11g0106 271 ProSitePatterns MADS-box domain signature. 48 102 IPR002100 GO:0003677|GO:0046983
Lan11g0106 271 Coils Coil 135 155 - -
Lan11g0106 271 PRINTS MADS domain signature 48 68 IPR002100 GO:0003677|GO:0046983
Lan11g0106 271 PRINTS MADS domain signature 68 83 IPR002100 GO:0003677|GO:0046983
Lan11g0106 271 PRINTS MADS domain signature 83 104 IPR002100 GO:0003677|GO:0046983
Lan11g0106 271 Gene3D - 58 159 IPR036879 GO:0003677|GO:0046983
Lan11g0106 271 MobiDBLite consensus disorder prediction 31 50 - -
Lan11g0106 271 CDD MADS_MEF2_like 47 121 IPR033896 GO:0000977|GO:0045944
Lan11g0106 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 55 102 IPR002100 GO:0003677|GO:0046983
Lan11g0106 271 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 37 263 - -
Lan11g0106 271 Coils Coil 205 225 - -
Lan11g0106 271 ProSiteProfiles K-box domain profile. 132 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0106 Lan-Chr11 607822 613837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0106 31 271 MADS-box Gene Family AT2G42830 69.758 9.39e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan11g0106 K-box 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0106 K09264 - gmx:100792224 387.882