Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0102 ATGGAAACTGATAATTCAAAAGCTGAAGAGTTCAAACGCCTTGCCAATGAAGCATTCGGTGCTCGCAAATATGCCCAAGCTATTGAGCTATATACTAAAGCAATTGAACTGAACAGTCAAAGTGCAGTTTACTTGGCCAATCGTGCCTTTGCCCATCTCCGGCTTGAGGAATATGGTAGTGCAATACAAGATGCTACAAAAGCGATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTACTGCTCATCTTGCCATGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTGAAGAAAATGTGCCCAAATGATCCTGATGCTACAAAGAAATTGAAGGAATGTGAAAAAGCTGTTATGAAACTTAAGTTTGAAGAAGCAATTGCTGTTCCAGAATCTCAAAGGCATTCAGTTGCCGAATCCATAGATTTCCACTCTATAGATGTGGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAGAATATGATGGGTGATTTCAAGAATCAGAAGTTCTTACATAAGCGTTATGCATTCCAGATTGTTTTGCAAACACGAGAGATATTGCGAGCTTTGCCTTCTCTTGTGGATATAAATGTTCCTAGTGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTCTTGAATATTTTCGAGCTTAATGGGCTTCCTTCAGAAGATAATCCTTATCTATTTAATGGTGACTTTGTGGATAGAGGATCTTTTTCTTTGGAAGTCATCCTCACCCTGTTTGCATTTAAGTGCATGTCTCCATCAGCGATTTATCTAGCTAGAGGAAATCATGAGAGCAAGAACATGAACAAGATATATGGTTTTGAGGGCGAGGTGCGCTCAAAATTGAATGAAACATTTGTGGAACTGTTTGCGGAAGTATTCTGCTGTTTACCTTTGGCTCATGTGATAAATGAGAAAGTTTTTGTAGTTCATGGAGGTCTATTTAGTGTTGATGGGGTCAAACTCTCTGATATCCGTGCAATTGATCGGTTTTGTGAGCCTCCAGAAGAAGGATTGATGTGTGAATTGCTTTGGAGTGATCCACAACCTCTCCCTGGAAGAGGTCCAAGCAAGCGGGGTGTAGGTCTTTCTTTTGGTGCAGATGTGACAAAAAGGTTTTTGCAAGAAAACAATCTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGATGAGGGTTATGAGATTGACCATGATGGTAAACTCATAACTGTTTTTTCTGCTCCAAATTATTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCTGATTTGAAGCCTAACATCGTAACATTCTCTGCAGTGGCACACCCAGATGTGAAGCCAATGGCTTATGCAAACAACTTTCTTCGGTTATTATCATAA 1440 0.3993 METDNSKAEEFKRLANEAFGARKYAQAIELYTKAIELNSQSAVYLANRAFAHLRLEEYGSAIQDATKAIEVDPKYSKGYYRRGTAHLAMGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAVPESQRHSVAESIDFHSIDVEPQYSGARIEGDVVTLDFVKNMMGDFKNQKFLHKRYAFQIVLQTREILRALPSLVDINVPSGKRFTVCGDVHGQYYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKNMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVRSHEVKDEGYEIDHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVAHPDVKPMAYANNFLRLLS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0102 479 Pfam Tetratricopeptide repeat 14 75 - -
Lan11g0102 479 SMART pp2a_7 185 461 IPR006186 GO:0016787
Lan11g0102 479 Gene3D - 136 478 IPR029052 -
Lan11g0102 479 Pfam PPP5 TPR repeat region 116 209 IPR013235 -
Lan11g0102 479 SUPERFAMILY TPR-like 2 134 IPR011990 GO:0005515
Lan11g0102 479 SUPERFAMILY Metallo-dependent phosphatases 165 473 IPR029052 -
Lan11g0102 479 Pfam Calcineurin-like phosphoesterase 217 411 IPR004843 GO:0016787
Lan11g0102 479 ProSiteProfiles TPR repeat profile. 76 109 IPR019734 GO:0005515
Lan11g0102 479 Pfam Tetratricopeptide repeat 77 109 IPR001440 GO:0005515
Lan11g0102 479 PRINTS Serine/threonine phosphatase family signature 217 244 IPR006186 GO:0016787
Lan11g0102 479 PRINTS Serine/threonine phosphatase family signature 247 274 IPR006186 GO:0016787
Lan11g0102 479 PRINTS Serine/threonine phosphatase family signature 280 304 IPR006186 GO:0016787
Lan11g0102 479 PRINTS Serine/threonine phosphatase family signature 314 340 IPR006186 GO:0016787
Lan11g0102 479 PRINTS Serine/threonine phosphatase family signature 344 371 IPR006186 GO:0016787
Lan11g0102 479 PRINTS Serine/threonine phosphatase family signature 400 420 IPR006186 GO:0016787
Lan11g0102 479 PRINTS Serine/threonine phosphatase family signature 422 438 IPR006186 GO:0016787
Lan11g0102 479 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 8 478 - -
Lan11g0102 479 ProSiteProfiles TPR repeat profile. 42 75 IPR019734 GO:0005515
Lan11g0102 479 ProSiteProfiles TPR repeat profile. 8 41 IPR019734 GO:0005515
Lan11g0102 479 SMART tpr_5 42 75 IPR019734 GO:0005515
Lan11g0102 479 SMART tpr_5 8 41 IPR019734 GO:0005515
Lan11g0102 479 SMART tpr_5 76 109 IPR019734 GO:0005515
Lan11g0102 479 CDD MPP_PP5_C 157 472 IPR041753 -
Lan11g0102 479 PIRSF PPPtase_5 1 479 - -
Lan11g0102 479 Gene3D Tetratricopeptide repeat domain 1 135 IPR011990 GO:0005515
Lan11g0102 479 PANTHER BNAC09G39960D PROTEIN 8 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0102 Lan-Chr11 581379 587434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0102 163 401 Calmodulin-binding Proteins AT5G63870 32.746 2.29e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0102 K04460 - sind:105165587 873.233