Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0068 ATGAGGAAAATATCTGCGCCGGCGACGGAAGCGTTAGAGATGATACCTCCGGTGGAGCCACGGTACCGTGGCGTGAGAAAGAGACCGTGGGGGAGATTCGCGGCGGAGATTAGAGACCCATTGAAGAAAGCAAGGGTATGGCTTGGAACATTCGATTCCGCCGAGGATGCGGCGCGTGCTTACGACGCGGCTGCTATATCCCTCCGTGGTCCCAAAGCAAAAACAAACTTCCCTATTAACCCTTCACCCTTTTACCATCACCTACCCACCGATCCTAACTTCCACCACCACCGTTACTACGCCACCAACGGCGGTGGTGGTTTTAATGACCATGTTGTTATTAACCCTAATAGACCAACATCTAGTGGAATGAGCAGCACCGTTGAGTCCTTCAGCGGTCCCCGTCATCCATCCGCCGTGCCTCCGCCGGTGGCGACAAGAAGATATCCTCGTACTCCGCCGGTGGTGGCGGAAGACTGCCATAGTGACTGCGACTCGTCGTCGTCGGTGGTTGATGACGGAGACAACATTGCTTCATCGTCGTTTAAAGCGCCGTTACCGTTTGATCTTAACGTGCCGCCGTTAGATGTTGATGCTGACGTGGCTATCGGTAATGGTTACTTTCATTGTACCGCTCTATGCCTATGA 648 0.5355 MRKISAPATEALEMIPPVEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAAISLRGPKAKTNFPINPSPFYHHLPTDPNFHHHRYYATNGGGGFNDHVVINPNRPTSSGMSSTVESFSGPRHPSAVPPPVATRRYPRTPPVVAEDCHSDCDSSSSVVDDGDNIASSSFKAPLPFDLNVPPLDVDADVAIGNGYFHCTALCL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0068 215 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Lan11g0068 215 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Lan11g0068 215 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Lan11g0068 215 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lan11g0068 215 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Lan11g0068 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 195 - -
Lan11g0068 215 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Lan11g0068 215 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Lan11g0068 215 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Lan11g0068 215 PANTHER ETHYLENE RESPONSE FACTOR 19 195 - -
Lan11g0068 215 MobiDBLite consensus disorder prediction 120 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0068 Lan-Chr11 399890 400920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0068 19 215 AP2-EREBP Transcription Factor Family AT3G20310 59.375 3.02e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan11g0068 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0068 K09286 - gmx:100782025 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1328 2 24080928 24082061 Lan11g0068 11 399890 400920 LSH
Lan11g0068 11 399890 400920 Lan9g1483 9 21509897 21510998 LSH
Lan2g1328 2 24080928 24082061 Lan11g0068 11 399890 400920 PCT
Lan9g1483 9 21509897 21510998 Lan11g0068 11 399890 400920 PCT
Lan11g0068 11 399890 400920 Lan2g1328 2 24080928 24082061 PCT
Lan11g0068 11 399890 400920 Lan9g1483 9 21509897 21510998 PCT