Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0060 ATGGAAGAAACGACGCCGCATCCCGAAGTTCATGTAGAAAACTCGTCTTTGGACTCAAAGCGTTCGATTTCGAGCGGCGAAGAAGATGAGCGGTGCAGCAAGAAGCATAAGGTTGATTCTCCCTCCACCGGCGAAGGGGAATTGAAGAGAGTGGCGGAGATAGTGTTGGTGTTATCTACTATGACCACGATGCGAGCTGGTAAGAAACCCACCGATGTTGAGGTTCACCTCATGAAGGAGGCGCGTGAGAAACTAGCGGAGCTTTGTCAAGGTTTGGCACCTAAGGATGTTGTAGCCAGGGAAGCTATTGGGACCGTCATTGAGGATCTTGGATTGAATGGGAAAATCAAGGACCAGAGGTTAGGGTTTCGGACTCCTAAATTCTCAATTGCGGAGAGGTTTTCAATTGCTAAGCGGAAGTTGGATGAATCAAAGAAGTTTTCTGCACCTTCCACAACTTACACATCTCAGCCCATGCAAACTAGCATCAGTGGAACAGCTGATAACCGTGTGCCGCCACCTCCTGTTCGGATATTTGCATCTGATAAATCAAGCCACACAGCAATCTCTTCTACTGGCACTGCAGTGTCTATTCCTGCCCATGTTTCTGCAGGACCTTCTGCAGCCTTGCAATATCAATCGTCCAACAATGAAGTAAGACCTCCTATGGTTTCCGGTATAATGCCTAGTAGTCACTTGGGGAGAAATCCACCTTCCTTAGCAATGCCTAAAGTTGATGGAGGATCAAATGCACCTTCTTATGTGCAGCAACTACCAGCAAATTCTCCAGCAAACCAACCTTTGGTGAATGCTCCGACATGGTCCATACCAACTCAGTCTGCATCATTAGCTAGAAGTGCATCAGAAAACAAGGTGCTTGGTCATAACTCTGTCAAGGTTGAAGGACCAAGTAGTGTAGCTGTGTCAAGGACAGGGCCACAAATAACAGCAGATCAGAGCTTTAGACCATTTATTAATCAAACAACTCCTGGAAATTTGTCTAGCATGAACAAGCCATTGCAGGGCGTGAACATAGTTCAGCCTCCTATGATTCCTAGTCACATTGACATTGCAAAGATTGTCCAGAAATTGTTACAACCAAAGCTTCCTGAGCTTCCCACATGGAATCCTCCATCAAGAGATTATATAAGTAAGGCTTTGACATGCCAGATGTGTGAGCTTGCTGTCAATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCTTGCAGCCGTCGGTCTTAAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGCGGTGGGAAGGCTTTGCCTCCAAAATATGGCCGTGTCATGAGATCTTCTAGCACACCACAAAAATTGCCCTCTAATACGGGTGACATTCAACCGTCTTCAGAGAATAAAGTGGGGAGCTTAGATCCAAATGTCAACCTTCAGAAGTTACCAACAAATGTGAGCTCTGTTCCAGCTGTTACTGCTGGCAATGACAATGCTCAGCCGCCATTTGACCCAGAGGCCCCAGACACGAAAGATATACAAGTTACCAGCATTTCATCCAACATTAATCATATTGATGAAAAGCCTGCTGATCCAAACATCTCTATAAAATCCCTTAGTGCAGCTTCTGGTCCTTCTGTTGGTTTGCCAGGTGCAAGTTCTGTTCAACAAATATATTCTGACTTTGAAGCTTCGATCTGTAAACAGACTTCAGAATCTGAGACTCTTCCCAAATTATCTGAGCCAGGTAATTGTGACAATTTACAATCATCACAAGATTTTCAAGTTGAGCAGACAGTGTCACAAGGCAATGCTGAACTACCATCAGATAAACATGTCGACAATAGTTTAATGAATAAAAAAATACAGGAATCTTATGGAGGAGAAAATTTAAGTAACAATTTGAAGAGTGGTGACCAAGATGTTGCACCAGCAAATTTTGGTGGAAGTTCTGGGACTAATACTGAATGTAGAATGCAGTCTGCATTATCTTCAGATAACTCAGATGGTGTAGAATGGGTTGGTGATGCTGTACAAGTTGTAGATGAGAAAAAGTTTTACCAGTCTTGCTGTATTGATGGAATAACATATAGGCTGCAGAGCTATGCTCTTTTCCCCTCCACCCATGGCAAATTAGCACCTTCGAAACTTCAGTCTATGTGGGAGGATTGCAAAACTGGGTTAAAGTGGATTAAGGTGACAAAATGCTACTTTCCTGGTGACTTGCCTGGGAATATTGGTCATCCTTGTGTATCTGAAGTTAATGAGCTTTATGAATCAAATAGTGATGGAACTGAATCGGCGAGCTCTATTCGAGGCCCATGTGAAGTCCTACCATCTGATAAATTTAAACAAGAAAATGACAGGCGAAGTCAGTTAGGAAATGAAGCAAGTGCTAGATTTCAGCCAATTTTCTCATGCAGGTGGTTTTATGATGAAATCAAAAAGTTATTCCAACCTGTCACCAGTTGA 2493 0.4328 MEETTPHPEVHVENSSLDSKRSISSGEEDERCSKKHKVDSPSTGEGELKRVAEIVLVLSTMTTMRAGKKPTDVEVHLMKEAREKLAELCQGLAPKDVVAREAIGTVIEDLGLNGKIKDQRLGFRTPKFSIAERFSIAKRKLDESKKFSAPSTTYTSQPMQTSISGTADNRVPPPPVRIFASDKSSHTAISSTGTAVSIPAHVSAGPSAALQYQSSNNEVRPPMVSGIMPSSHLGRNPPSLAMPKVDGGSNAPSYVQQLPANSPANQPLVNAPTWSIPTQSASLARSASENKVLGHNSVKVEGPSSVAVSRTGPQITADQSFRPFINQTTPGNLSSMNKPLQGVNIVQPPMIPSHIDIAKIVQKLLQPKLPELPTWNPPSRDYISKALTCQMCELAVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKALPPKYGRVMRSSSTPQKLPSNTGDIQPSSENKVGSLDPNVNLQKLPTNVSSVPAVTAGNDNAQPPFDPEAPDTKDIQVTSISSNINHIDEKPADPNISIKSLSAASGPSVGLPGASSVQQIYSDFEASICKQTSESETLPKLSEPGNCDNLQSSQDFQVEQTVSQGNAELPSDKHVDNSLMNKKIQESYGGENLSNNLKSGDQDVAPANFGGSSGTNTECRMQSALSSDNSDGVEWVGDAVQVVDEKKFYQSCCIDGITYRLQSYALFPSTHGKLAPSKLQSMWEDCKTGLKWIKVTKCYFPGDLPGNIGHPCVSEVNELYESNSDGTESASSIRGPCEVLPSDKFKQENDRRSQLGNEASARFQPIFSCRWFYDEIKKLFQPVTS* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0060 830 ProSiteProfiles Zinc finger PHD-type profile. 386 439 IPR019787 -
Lan11g0060 830 MobiDBLite consensus disorder prediction 453 483 - -
Lan11g0060 830 Pfam PHD-finger 389 437 IPR019787 -
Lan11g0060 830 MobiDBLite consensus disorder prediction 495 517 - -
Lan11g0060 830 MobiDBLite consensus disorder prediction 451 483 - -
Lan11g0060 830 SMART PHD_3 388 437 IPR001965 -
Lan11g0060 830 MobiDBLite consensus disorder prediction 635 658 - -
Lan11g0060 830 ProSiteProfiles BAH domain profile. 702 829 IPR001025 GO:0003682
Lan11g0060 830 ProSitePatterns Zinc finger PHD-type signature. 389 436 IPR019786 -
Lan11g0060 830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 454 IPR013083 -
Lan11g0060 830 CDD BAH 701 829 - -
Lan11g0060 830 MobiDBLite consensus disorder prediction 1 45 - -
Lan11g0060 830 SUPERFAMILY FYVE/PHD zinc finger 380 442 IPR011011 -
Lan11g0060 830 Gene3D - 671 830 IPR043151 -
Lan11g0060 830 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 829 - -
Lan11g0060 830 MobiDBLite consensus disorder prediction 148 173 - -
Lan11g0060 830 MobiDBLite consensus disorder prediction 148 168 - -
Lan11g0060 830 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 829 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan11g0060 PHD 1.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0060 - - gmx:100807139 1145.95